Jatropha Genome Database

JcCA0009731.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0009731.30 - phase: 0 
         (140 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g17140.1                                                        59   2e-09
Glyma10g02650.1                                                        56   2e-08

>Glyma02g17140.1 
          Length = 139

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 1   MASFWSFLTMFIIFMAYFASLAFTSHVVHVQFSTISAAPAFXXXXXXXXXXXXXXXXDIE 60
           MASFW FL MF+  MAY  S   ++    +  STISAAP                  DIE
Sbjct: 1   MASFWPFLVMFMASMAYNCSSLASASRQSMHVSTISAAPT--TLPGAPLYFSPTISPDIE 58

Query: 61  PVFPTTGVAVPSPAEXXXXXXXXXXXXXXXDVIHPAPGPSMAFSPSGSLPASSATSVNQA 120
           P+FPT G A  SP+E               DV + +PG  +AF PS S+PA + +S   +
Sbjct: 59  PLFPTPGRAAFSPSESSIPTIPSSPSPPNPDVTN-SPGSVLAFPPSESMPAMAPSSHGAS 117

Query: 121 AVYF--LGLLLVVFSLMQL 137
              +  L L ++V  +MQL
Sbjct: 118 LPLYSVLHLAILVICIMQL 136


>Glyma10g02650.1 
          Length = 140

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 1   MASFWSFLTMFIIFMAYFASLAFTSHVVHVQFSTISAAPAFXXXXXXXXXXXXXXXXDIE 60
           MASFW FL MF+  MA   S   ++    +  STISAAP                  DIE
Sbjct: 1   MASFWPFLAMFMALMACNCSSLASASRQSMHVSTISAAPT--TLPGAPLYYSPTMSPDIE 58

Query: 61  PVFPTTGVAVPSPAEXXXXXXXXXXXXXXXDVIHPAPGPSMAFSPSGSLPASSATSVNQA 120
           P+FPT G +  SP+E               DV + +PG  +AF PS S+PA + +S   +
Sbjct: 59  PLFPTPGGSAFSPSESSIPTIPSSPSPPNPDVTN-SPGSVLAFPPSESMPAMAPSSKGAS 117

Query: 121 AVYFLGL---LLVVFSLMQL 137
              +  L   +LV+  +MQL
Sbjct: 118 LPVYSVLHLAILVIICIMQL 137