Jatropha Genome Database

JcCA0008021.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0008021.50 + phase: 0 /pseudo/partial
         (137 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g07940.1                                                        75   1e-14
Glyma01g37360.1                                                        74   4e-14

>Glyma11g07940.1 
          Length = 192

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 42/51 (82%), Gaps = 1/51 (1%)

Query: 8   IHLIENPAINEFD-IIVEPRPINPNNNHISLLCKNIGLVKRRLQERGIRYV 57
           IHLIENP I+EFD  +VE RPINP +NHIS  C ++ LVK+RL+ERG+RYV
Sbjct: 65  IHLIENPNIDEFDTCVVEERPINPKDNHISFQCTDVELVKKRLEERGMRYV 115


>Glyma01g37360.1 
          Length = 192

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 41/51 (80%), Gaps = 1/51 (1%)

Query: 8   IHLIENPAINEFDIIV-EPRPINPNNNHISLLCKNIGLVKRRLQERGIRYV 57
           IHLIENP I+EFD  V E RPINP +NHIS  C ++ LVK+RL+ERG+RYV
Sbjct: 65  IHLIENPNIDEFDTCVNEERPINPKDNHISFQCTDVELVKKRLEERGMRYV 115