Jatropha Genome Database

JcCA0008021.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0008021.30 - phase: 0 
         (157 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g02240.1                                                       188   2e-48
Glyma07g08900.1                                                       171   3e-43
Glyma20g32760.1                                                       124   4e-29
Glyma14g23800.1                                                        66   2e-11

>Glyma03g02240.1 
          Length = 151

 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/122 (77%), Positives = 103/122 (84%), Gaps = 1/122 (0%)

Query: 37  LEPIDREKTCPLLLRVFTKIGSHHKMEDFAVGGKEPKDEVQIYTWKDATLHELTDLVKEV 96
           LEP+DREKTCPLLLRVFTKIGSHH MEDFAV GKEPKDEVQIYTWKDATL ELTDLVKEV
Sbjct: 30  LEPVDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 89

Query: 97  VPEARRQSARLSFAFVYPDIHGRFMLRVVGVTHSNAR-RPYDAKALGELSFQIGDYLDVA 155
            P ARR++A+LSFAFV+PD +GRF ++ VG T S    R  D KAL EL F+IGDYLDVA
Sbjct: 90  APAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNGRLDDGKALAELGFEIGDYLDVA 149

Query: 156 IL 157
           IL
Sbjct: 150 IL 151


>Glyma07g08900.1 
          Length = 765

 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/128 (71%), Positives = 99/128 (77%), Gaps = 7/128 (5%)

Query: 29  HPLSRWPGLEPIDREKTCPLLLRVFTKIGSHHKMEDFAVGGKEPKDEVQIYTWKDATLHE 88
           HP SR   LEPIDREKTCPLLLRVFTKIGSHH MEDFAV GKEP+DEVQIYTWKDATL E
Sbjct: 638 HPPSR-SCLEPIDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPEDEVQIYTWKDATLRE 696

Query: 89  LTDLVKEVVPEARRQSARLSFAFVYPDIHGRFMLR-----VVGVTHSNAR-RPYDAKALG 142
           LTDLVKEV P ARR++A+LSFAF++PD +GRF  R      VG T S    R  D KAL 
Sbjct: 697 LTDLVKEVAPAARRRNAKLSFAFIFPDKNGRFKRRGMNAIAVGKTLSYGNGRLDDGKALA 756

Query: 143 ELSFQIGD 150
           EL F+IGD
Sbjct: 757 ELGFEIGD 764


>Glyma20g32760.1 
          Length = 111

 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 68/81 (83%)

Query: 40  IDREKTCPLLLRVFTKIGSHHKMEDFAVGGKEPKDEVQIYTWKDATLHELTDLVKEVVPE 99
           I+ +KT PLLL VFTKIGSHH MEDF V GKE KDEVQIYTWKDATL ELT+LVKEV   
Sbjct: 29  INHKKTRPLLLIVFTKIGSHHSMEDFVVRGKESKDEVQIYTWKDATLRELTNLVKEVALT 88

Query: 100 ARRQSARLSFAFVYPDIHGRF 120
           ARR++A+LSFAFV+PD + RF
Sbjct: 89  ARRRNAKLSFAFVFPDKNDRF 109


>Glyma14g23800.1 
          Length = 36

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 31/36 (86%)

Query: 45 TCPLLLRVFTKIGSHHKMEDFAVGGKEPKDEVQIYT 80
          TCPLLL+VF KI SHH MEDF + GKEPKDEVQIYT
Sbjct: 1  TCPLLLQVFAKIRSHHSMEDFVIRGKEPKDEVQIYT 36