Jatropha Genome Database

JcCA0006671.80
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006671.80 + phase: 0 
         (134 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g17850.1                                                        55   2e-08
Glyma15g41280.1                                                        52   2e-07

>Glyma08g17850.1 
          Length = 292

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 29/47 (61%)

Query: 73  SLEYDFYRDSCPQXXXXXXXXXXXXCKTQSNVAPALLRLAFHDCFIE 119
           +LEYDFYRD+CPQ                 +VAPALLRL FHDCFIE
Sbjct: 6   NLEYDFYRDTCPQAEGVVRSALTRIYFDHRDVAPALLRLFFHDCFIE 52


>Glyma15g41280.1 
          Length = 314

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 28/47 (59%)

Query: 73  SLEYDFYRDSCPQXXXXXXXXXXXXCKTQSNVAPALLRLAFHDCFIE 119
           +LEYDFY D+CPQ                 +VAPALLRL FHDCFIE
Sbjct: 6   NLEYDFYMDTCPQAEGVVRSALTRIYFDHRDVAPALLRLFFHDCFIE 52