Jatropha Genome Database

JcCA0006582.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006582.10 + phase: 0 /partial
         (593 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g15760.1                                                       124   2e-28
Glyma17g15800.1                                                       110   6e-24

>Glyma17g15760.1 
          Length = 787

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 79/114 (69%)

Query: 480 LVLSFLQNINNLLAVGVLVRTRRAVLLNWKWLCLESLLSIPQTAVENGIHLEDNRSFFSD 539
           + +SF+QNIN+LL  GVL RTRRAVLL  KW+CLESLLSIP  A +NG +LE+N +FFSD
Sbjct: 1   MCVSFIQNINDLLGSGVLARTRRAVLLEIKWVCLESLLSIPSCAFKNGFNLEENPTFFSD 60

Query: 540 AVIRYIFSDLVESLENSGESSVLPMLRSIRXXXXXXXXXXXXXXXXXCNDVDSQ 593
             ++ IF DLVESLEN+ ES VLPMLRS+R                 C+ +++Q
Sbjct: 61  DTLKCIFGDLVESLENAAESCVLPMLRSLRMLFELVAKVMSNAAASHCHLINAQ 114


>Glyma17g15800.1 
          Length = 674

 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 77/136 (56%), Gaps = 20/136 (14%)

Query: 1   VLGPFIEGLNDPVHHKRFC----------------LYQYTRHLNVRKGIDFLHSLALIAK 44
           VLGPF++GLNDP+HHK F                 L+ Y   +  RK I FL++LA  AK
Sbjct: 542 VLGPFMQGLNDPIHHKEFGVKGVYMSRVIEGAAQFLHYYVSFIAPRKCIAFLYNLASTAK 601

Query: 45  HQSFGRAGLMGLAECIASAASGVGIQDDNEVEWSEDASPNAVQLKSSSNKIHHXXXXXXX 104
           HQSFGRAGLMGLAECIASAASG+GI +    E      P    ++  S   +        
Sbjct: 602 HQSFGRAGLMGLAECIASAASGIGILNRVRTESFNGTFP----VEFVSEMENQTDKKELL 657

Query: 105 XXXRFVIESSKQHFNP 120
              R+V+ESSKQHFNP
Sbjct: 658 DIFRYVVESSKQHFNP 673