Jatropha Genome Database

JcCA0004001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0004001.10 + phase: 2 /TE/pseudo/partial
         (117 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g29590.1                                                        72   1e-13
Glyma15g09420.1                                                        53   9e-08
Glyma07g34840.1                                                        48   3e-06

>Glyma13g29590.1 
          Length = 547

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 4/98 (4%)

Query: 1   WSLKGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVL 60
           W+ +   + + CGG++RD  G ++ GF V LG  ++ +AEL  + HGL  AWD+GC++V 
Sbjct: 392 WNHRNGCSGSACGGLVRDSSGCYLGGFTVNLGNTSVTLAELWGVVHGLKLAWDLGCKKVK 451

Query: 61  VEMDSKMALDLVMKRDCSNRRFVNVLS----LIREFWL 94
           V++DS  AL LV     +N     ++S    L+R+ WL
Sbjct: 452 VDIDSGNALGLVRHGPVANDPAFALVSEINELVRKEWL 489


>Glyma15g09420.1 
          Length = 825

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 35/52 (67%)

Query: 8   TPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREV 59
           T + CGG++RD  G ++ GF V LG   + +AEL  + HGL  AWD+GC++V
Sbjct: 697 TGSACGGLVRDSSGCFLGGFTVNLGITAVTLAELWGVVHGLKLAWDLGCKKV 748


>Glyma07g34840.1 
          Length = 1562

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 33/67 (49%)

Query: 13   GGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDSKMALDLV 72
            GGVI D    W+ G     G      AE+  L HGL  AWD G R +L EMD+K  +D+ 
Sbjct: 1480 GGVICDHTYNWIVGVYSFDGLGDSAKAEIMALRHGLILAWDKGFRNILCEMDNKNMVDIF 1539

Query: 73   MKRDCSN 79
                C +
Sbjct: 1540 NNNCCPD 1546