Jatropha Genome Database

JcCA0003732.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003732.40 - phase: 2 /TE/partial
         (75 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g13760.1                                                        55   1e-08
Glyma06g18690.1                                                        55   2e-08
Glyma15g38910.1                                                        54   5e-08
Glyma03g04980.1                                                        48   2e-06
Glyma14g17420.1                                                        47   4e-06
Glyma09g26090.1                                                        47   5e-06

>Glyma07g13760.1 
          Length = 995

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 37/45 (82%)

Query: 13  HIDVRYHWIRDVLDSKSIELEKIHTDDNGADMCTKSLPRMKFEIC 57
           HIDV+ H+IRDV++S+ +++EK+ T++N A+M TKSL  +KF+ C
Sbjct: 942 HIDVKLHFIRDVIESEKVKVEKVSTEENSANMFTKSLSSVKFKHC 986


>Glyma06g18690.1 
          Length = 1169

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 13   HIDVRYHWIRDVLDSKSIELEKIHTDDNGADMCTKSLPRMKFEIC 57
            HID+R H+IRDV+    + +EKI T DN ADM TK+LP +KF+ C
Sbjct: 1117 HIDIRMHFIRDVVTQGDVLIEKISTLDNPADMRTKALPTIKFKQC 1161


>Glyma15g38910.1 
          Length = 498

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 36/45 (80%)

Query: 13  HIDVRYHWIRDVLDSKSIELEKIHTDDNGADMCTKSLPRMKFEIC 57
           H+DV+Y++IRD++ S++++++KI T++N A M TK+LP  KF  C
Sbjct: 442 HVDVKYYFIRDMIKSEAVDIDKISTNENVAGMLTKTLPYEKFNYC 486


>Glyma03g04980.1 
          Length = 1363

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 13   HIDVRYHWIRDVLDSKSIELEKIHTDDNGADMCTKSLPRMKFEIC 57
            HID++ ++IR+V+D  S+ ++KI TD N +DM TK+ P  KF  C
Sbjct: 1310 HIDIKLYFIREVIDQGSVIVKKISTDHNPSDMITKAFPSSKFFHC 1354


>Glyma14g17420.1 
          Length = 1459

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 13   HIDVRYHWIRDVLDSKSIELEKIHTDDNGADMCTKSLPRMKFEIC 57
            HID++ H++++V+   S+ ++KI TD N +DM TK+LP  KF  C
Sbjct: 1406 HIDIKLHFVKEVIGQGSVIVKKISTDHNPSDMITKALPSSKFFHC 1450


>Glyma09g26090.1 
          Length = 2169

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 32/43 (74%)

Query: 13   HIDVRYHWIRDVLDSKSIELEKIHTDDNGADMCTKSLPRMKFE 55
            HID+R+H+IRD++D K I LE + T++  AD+ TK+L   +FE
Sbjct: 1524 HIDIRHHYIRDLVDDKVITLEHVATEEQVADIFTKALDANQFE 1566