Jatropha Genome Database

JcCA0000041.60
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.60 + phase: 0 /partial
         (188 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g03190.1                                                       145   4e-35
Glyma15g07470.1                                                        72   4e-13
Glyma14g12200.1                                                        53   2e-07

>Glyma07g03190.1 
          Length = 126

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 77/83 (92%)

Query: 106 IHTILHFSTNIICFVILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIG 165
           ++TILHFSTNIICF ILSGYSIL N+EL+++NS VQEF+YNLSDTIKAFSILLLTDLCIG
Sbjct: 1   MNTILHFSTNIICFFILSGYSILGNQELVLINSLVQEFIYNLSDTIKAFSILLLTDLCIG 60

Query: 166 FHSPHGWELMIGSVYKDFGFAHN 188
           FHS HGWEL+IG VYKDFGFA N
Sbjct: 61  FHSTHGWELVIGFVYKDFGFAQN 83


>Glyma15g07470.1 
          Length = 125

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 42/50 (84%)

Query: 117 ICFVILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGF 166
           +C    +GYSIL N+EL+++NS V+EF+YNLSDTIKAFSILLLTDL  GF
Sbjct: 30  VCLKFGNGYSILGNQELVLINSLVREFIYNLSDTIKAFSILLLTDLYFGF 79


>Glyma14g12200.1 
          Length = 210

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 60/134 (44%), Gaps = 49/134 (36%)

Query: 55  EKSILEKFIELEELVRLDEMIKEYPETHLQGFRTGIHKETIQLIKMHNEDRIHTILHFST 114
           EKSIL+KFI+ EEL  LD++               I++ T Q    +N            
Sbjct: 83  EKSILKKFIKFEELFFLDDI------------NNPINQNTQQRSYEYN------------ 118

Query: 115 NIICFVILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWEL 174
               FV+L  Y++              + L+   +T+K FSILLLTDLCIGFHS H    
Sbjct: 119 ----FVLLEKYNLF----------LYSKRLFYSCETVKFFSILLLTDLCIGFHSTH---- 160

Query: 175 MIGSVYKDFGFAHN 188
                  DFGFA N
Sbjct: 161 -------DFGFAQN 167