Jatropha Genome Database

JcCA0000041.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.30 + phase: 0 
         (493 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g13780.1                                                        64   5e-10
Glyma15g39770.1                                                        52   1e-06

>Glyma20g13780.1 
          Length = 143

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 34/40 (85%)

Query: 254 KMSSSDRIELSIDLGTWNPMDEDMVSLDPIEFHSEEEPYK 293
           KM SS+RI+LSI+ GTWNPMDEDMVSLDPIEF +++   K
Sbjct: 81  KMGSSNRIDLSINSGTWNPMDEDMVSLDPIEFKTQKNDVK 120


>Glyma15g39770.1 
          Length = 126

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 9  ILSNVELGYRCRLSKSMDSFSPLENTSISEDP-ILNDTDKNTH 50
          +L N +L YRC LSKSMDS  P+ENTS+ EDP IL D +K  H
Sbjct: 1  MLFNRKLEYRCELSKSMDSLGPIENTSLREDPKILTDIEKKIH 43