Jatropha Genome Database

JcCA0000015.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000015.20 + phase: 1 /partial
         (102 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g11920.1                                                        47   5e-06
Glyma13g11840.1                                                        47   5e-06

>Glyma13g11920.1 
          Length = 58

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/24 (87%), Positives = 21/24 (87%)

Query: 79  PFRGPSPGVEQSTQNWYGQGESDC 102
           PF   SPGVEQSTQNWYGQGESDC
Sbjct: 22  PFGASSPGVEQSTQNWYGQGESDC 45


>Glyma13g11840.1 
          Length = 58

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/24 (87%), Positives = 21/24 (87%)

Query: 79  PFRGPSPGVEQSTQNWYGQGESDC 102
           PF   SPGVEQSTQNWYGQGESDC
Sbjct: 22  PFGASSPGVEQSTQNWYGQGESDC 45