Jatropha Genome Database

JMS23C14r.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JMS23C14r.10 - phase: 0 /partial
         (167 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g28380.1                                                       194   3e-50
Glyma08g11370.1                                                       191   5e-49
Glyma13g07270.1                                                       121   3e-28
Glyma05g28380.2                                                       119   2e-27
Glyma13g07310.1                                                       109   1e-24

>Glyma05g28380.1 
          Length = 916

 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 116/135 (85%), Gaps = 7/135 (5%)

Query: 10  FDEISPLLLAVLLDESKEKVCIPRGDAWSVHKFGGTCVGTSERIKNVAEIIVNDGSEGKL 69
           F ++SP   +V L+E +    +P+G+ WSVHKFGGTCVGTS+RIKNVA+II+ D SE KL
Sbjct: 67  FTDVSP---SVSLEEKQ----LPKGETWSVHKFGGTCVGTSQRIKNVADIILKDDSERKL 119

Query: 70  VVVSAMSKVTDMMYDLIYKAQSRDDSYIAAVDAVFEKHRLTAMDLLDGEDLASFLSRLHH 129
           VVVSAMSKVTDMMYDLI+KAQSRD+SYIAA+DAV EKH  TA D+LDG++LASFLS+LHH
Sbjct: 120 VVVSAMSKVTDMMYDLIHKAQSRDESYIAALDAVSEKHSATAHDILDGDNLASFLSKLHH 179

Query: 130 DVNNLKAMLRAIYIG 144
           D++NLKAMLRAIYI 
Sbjct: 180 DISNLKAMLRAIYIA 194


>Glyma08g11370.1 
          Length = 916

 Score =  191 bits (484), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 125/168 (74%), Gaps = 21/168 (12%)

Query: 10  FDEISPLLLAVLLDESKEKVCIPRGDAWSVHKFGGTCVGTSERIKNVAEIIVNDGSEGKL 69
           F ++SP    V L+E +    +P+G+ WSVHKFGGTCVGTS+RIKNVA+II+ D SE KL
Sbjct: 67  FTDVSP---NVSLEEKQ----LPKGETWSVHKFGGTCVGTSQRIKNVADIILKDDSERKL 119

Query: 70  VVVSAMSKVTDMMYDLIYKAQSRDDSYIAAVDAVFEKHRLTAMDLLDGEDLASFLSRLHH 129
           VVVSAMSKVTDMMYDLI+KAQSRD+SY AA++AV EKH  TA D+LDG++LA+FLS+LHH
Sbjct: 120 VVVSAMSKVTDMMYDLIHKAQSRDESYTAALNAVLEKHSATAHDILDGDNLATFLSKLHH 179

Query: 130 DVNNLKAMLRAIYI-------------GIGPLF-LSLLDHTVRVNGFD 163
           D++NLKAMLRAIYI             G G L+   +L   +R NG D
Sbjct: 180 DISNLKAMLRAIYIAGHATESFTDFVVGHGELWSAQMLSLVIRKNGTD 227


>Glyma13g07270.1 
          Length = 134

 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 70/79 (88%)

Query: 25  SKEKVCIPRGDAWSVHKFGGTCVGTSERIKNVAEIIVNDGSEGKLVVVSAMSKVTDMMYD 84
           S E+  +P+G+ WSVHKFGGTCVGTS+RIKNVA+II+ D S  KLVVVSAMSKV +MMYD
Sbjct: 56  SLEEKQLPKGETWSVHKFGGTCVGTSQRIKNVADIILKDDSGRKLVVVSAMSKVKNMMYD 115

Query: 85  LIYKAQSRDDSYIAAVDAV 103
           LI+KAQSRD+SYIAA+D+V
Sbjct: 116 LIHKAQSRDESYIAALDSV 134


>Glyma05g28380.2 
          Length = 715

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 65/70 (92%)

Query: 75  MSKVTDMMYDLIYKAQSRDDSYIAAVDAVFEKHRLTAMDLLDGEDLASFLSRLHHDVNNL 134
           MSKVTDMMYDLI+KAQSRD+SYIAA+DAV EKH  TA D+LDG++LASFLS+LHHD++NL
Sbjct: 1   MSKVTDMMYDLIHKAQSRDESYIAALDAVSEKHSATAHDILDGDNLASFLSKLHHDISNL 60

Query: 135 KAMLRAIYIG 144
           KAMLRAIYI 
Sbjct: 61  KAMLRAIYIA 70


>Glyma13g07310.1 
          Length = 278

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 63/76 (82%), Gaps = 4/76 (5%)

Query: 19  AVLLDESKEKVCIPRGDAWSVHKFGGTCVGTSERIKNVAEIIVNDGSEGKLVVVSAMSKV 78
            V L+E K    +P+G+ WSVHKFGGTCVGTS+RIKNVA+II+ D S  KLVVVSAMSKV
Sbjct: 205 GVSLEEKK----LPKGETWSVHKFGGTCVGTSQRIKNVADIILKDDSGRKLVVVSAMSKV 260

Query: 79  TDMMYDLIYKAQSRDD 94
            +MMYDLI+KAQSRD+
Sbjct: 261 KNMMYDLIHKAQSRDE 276