Jatropha Genome Database

Jcr4S00542.10  
Related links:
Predicted Sequence Links:
Genome Sequence: Jcr4S00542
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl F6GTY8_VITVI 915 99.1 99.8 (tr|F6GTY8) Elongation factor 1-alpha OS=Vitis vinifera GN=VIT_06s0004g03220 PE=3 SV=1
Arabidopsis_pep AT5G60390.3 886 95.5 98.2 | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449
soybean_pep Glyma16g07350.1 904 97.3 99.3  
Medicago_pep IMGA|Medtr4g019170.1 890 96.0 98.2 Elongation factor 1-alpha (AHRD V1 ***- Q3LUM5_GOSHI); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal chr04_pseudomolecule_IMGAG_V3.5 5037739-5035552 E EGN_Mt100125 20100825
grape_pep GSVIVT01015660001 296 37.2 58.1  
castor_bean_cds 29938.m000598 1368 88.0 88.0 elongation factor 1-alpha, putative
castor_bean_pep 29938.m000598 915 99.8 99.8 elongation factor 1-alpha, putative
JAT_unigene contig00442 1239 99.5 99.5 length=637 numreads=1129 gene=isogroup00003 status=isotig
A list of protein families, domains and functional sites (searches in InterPro)
Jcr4S00542.10 length: 447 aa.
IPR000795 Protein synthesis factor, GTP-binding
method AccNumber shortName E-value location
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
FPrintScan PR00315 ELONGATNFCT 1.4e-23 9-22
68-76
88-98
104-115
148-157
HMMPfam PF00009 GTP_EFTU 1.8e-55 6-222
PatternScan PS00301 EFACTOR_GTP NA 61-76
IPR004160 Translation elongation factor EFTu/EF1A, C-terminal
Molecular Function GO:0005525 GTP binding    
HMMPfam PF03143 GTP_EFTU_D3 2.2e-32 322-429
IPR004161 Translation elongation factor EFTu/EF1A, domain 2
Molecular Function GO:0005525 GTP binding    
HMMPfam PF03144 GTP_EFTU_D2 2.4e-17 248-314
IPR004539 Translation elongation factor EF1A, eukaryotic/archaeal
Molecular Function GO:0003746 translation elongation factor activity    
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006414 translational elongation    
HMMTigr TIGR00483 EF-1_alpha: 6.3e-215 1-433
IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel
superfamily SSF50447 Translation 3.7e-30 225-321
IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
superfamily SSF50465 EF-Tu/eEF-1alpha/eIF2-gamma 1.3e-40 325-431
no_ID  
Gene3D G3DSA:2.40.30.10 no description 2.4e-53 233-337
338-429
Gene3D G3DSA:3.40.50.300 no description 3.4e-88 4-232
HMMPanther PTHR23115 FAMILY 5.3e-262 1-446
HMMPanther PTHR23115:SF57 SUBFAMILY 5.3e-262 1-446
superfamily SSF52540 P-loop 8.3e-92 2-249