Jatropha Genome Database

Jcr4U33242.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U33242.10
         (214 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038218001 assembled CDS                                       122   1e-28
GSVIVT01014552001 assembled CDS                                        48   3e-06

>GSVIVT01038218001 assembled CDS
          Length = 204

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 79/121 (65%), Gaps = 4/121 (3%)

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 59
           M +GT IHNIEI  G+GG+L RAAG  AKL+ +      L ++PSG  +LI   C AT+G
Sbjct: 68  MRIGTIIHNIEINPGQGGKLVRAAGTSAKLLKEPTSRYVLVRMPSGVQKLIDTRCRATIG 127

Query: 60  QVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPATPW 116
            V N G   K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+  G    +   TPW
Sbjct: 128 TVSNPGHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSGGSHGRGSLTPW 187

Query: 117 G 117
           G
Sbjct: 188 G 188


>GSVIVT01014552001 assembled CDS
          Length = 136

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 58
           +P G  + N+E  +G  G  ARA+G  A +++    + T  +KLPSG  ++I   C A V
Sbjct: 26  IPEGAVVCNVEHHVGDRGVFARASGDYAIVVSHNPDNGTSRIKLPSGAKKIIPSGCRAMV 85

Query: 59  GQVGNTGVNQKSLGRAGS 76
           GQV   G  +K + +AG+
Sbjct: 86  GQVAGGGRTEKPMLKAGN 103