Jatropha Genome Database

Jcr4U33242.10
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jcr4U33242.10
         (644 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004740 50S ribosomal protein L2, putative                      385   e-106
29346.m000114 conserved hypothetical protein                           52   4e-06

>29929.m004740 50S ribosomal protein L2, putative
          Length = 336

 Score =  385 bits (194), Expect = e-106
 Identities = 206/210 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcccttaggcacggccatacataacatagaaatcacacttggaaagggtggacaatta 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 115 atgcccttaggcacggccatacataacatagaaatcacatttggaaagggtggacaatta 174

                                                                       
Query: 61  gctagagctgcaggtgctgtagcgaaactgattgcaaaagaggggaaatcggccacatta 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gctagagctgcaagtgctgtagcgaaactgattgcaaaagaggggaaatcggccacatta 234

                                                                       
Query: 121 aaattaccttctggggaggttcgtttaatatccaaaaactgctcagcaacagtcggacaa 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aaattaccttctgaggaggttcgtttaatatccaaaaactgctcagcaacagtcggacaa 294

                                         
Query: 181 gtaggcaatactggggtgaaccagaaaagt 210
           ||||| ||||||||||||||||||||||||
Sbjct: 295 gtaggaaatactggggtgaaccagaaaagt 324


>29346.m000114 conserved hypothetical protein
          Length = 180

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 9   aggcacggccatacataacatagaaatcacacttggaa 46
           |||||||| |||||||||||||| ||||||| ||||||
Sbjct: 114 aggcacggtcatacataacataggaatcacatttggaa 151