Jatropha Genome Database

Jcr4U33242.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U33242.10
         (214 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004740 50S ribosomal protein L2, putative                      132   1e-31
29949.m000118 50S ribosomal protein L2, putative                      121   2e-28
30156.m001699 60S ribosomal protein L8, putative                       75   2e-14
29743.m000298 60S ribosomal protein L8, putative                       75   3e-14

>29929.m004740 50S ribosomal protein L2, putative
          Length = 111

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/70 (95%), Positives = 67/70 (95%)

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEIT GKGGQLARAA AVAKLIAKEGKSATLKLPS EVRLISKNCSATVGQ
Sbjct: 39  MPLGTAIHNIEITFGKGGQLARAASAVAKLIAKEGKSATLKLPSEEVRLISKNCSATVGQ 98

Query: 61  VGNTGVNQKS 70
           VGNTGVNQKS
Sbjct: 99  VGNTGVNQKS 108


>29949.m000118 50S ribosomal protein L2, putative
          Length = 241

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 81/122 (66%), Gaps = 6/122 (4%)

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEG-KSATLKLPSGEVRLISKNCSATVG 59
           M +GT IHNIE+  G+GG+L RAAG  AK++ +   K   +KLPSG  +LI   C AT+G
Sbjct: 81  MRIGTFIHNIEVNPGQGGKLVRAAGTCAKIMKEPTEKHCLVKLPSGVEKLIDSRCRATIG 140

Query: 60  QVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRA----PIGRKKPATP 115
           +V N   + + L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+      GR    TP
Sbjct: 141 RVSNPSHSTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGSFGRVS-QTP 199

Query: 116 WG 117
           WG
Sbjct: 200 WG 201


>30156.m001699 60S ribosomal protein L8, putative
          Length = 261

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 15/113 (13%)

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 58
           +P G  + N+E  +G  G  AR +G  A +I+    + T  +KLPSG  +++   C A V
Sbjct: 107 IPEGAVVCNVEHHVGDRGSFARCSGDYAIVISHNPDNGTTRIKLPSGAKKIVPSGCRAMV 166

Query: 59  GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 102
           GQV   G  +K + +AG+          CW    P VRGV MNPV+HPHGGG 
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKYRVKRNCW----PKVRGVAMNPVEHPHGGGN 215


>29743.m000298 60S ribosomal protein L8, putative
          Length = 261

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 15/113 (13%)

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 58
           +P G  + N+E  +G  G  AR +G  A +I+    + T  +KLPSG  +++   C A V
Sbjct: 107 IPEGAVVCNVEHHVGDRGAFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMV 166

Query: 59  GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 102
           GQV   G  +K + +AG+          CW    P VRGV MNPV+HPHGGG 
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKYRVKRNCW----PKVRGVAMNPVEHPHGGGN 215