Jatropha Genome Database
- Jcr4U33242.10
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4U33242.10
(214 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:1528... 232 2e-61
ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:8433... 232 2e-61
AT2G44065.2 | Symbols: | Ribosomal protein L2 family | chr2:182... 110 9e-25
AT2G44065.1 | Symbols: | Ribosomal protein L2 family | chr2:182... 110 9e-25
AT3G51190.1 | Symbols: | Ribosomal protein L2 family | chr3:190... 85 4e-17
AT4G36130.1 | Symbols: | Ribosomal protein L2 family | chr4:170... 78 4e-15
AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family | c... 77 1e-14
>ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 |
chrC:152806-154312 FORWARD LENGTH=274
Length = 274
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 115/117 (98%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192
Query: 61 VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 117
VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWG
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWG 249
>ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 |
chrC:84337-85843 REVERSE LENGTH=274
Length = 274
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 115/117 (98%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192
Query: 61 VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 117
VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWG
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWG 249
>AT2G44065.2 | Symbols: | Ribosomal protein L2 family |
chr2:18228860-18230368 FORWARD LENGTH=214
Length = 214
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 59
M +GT IHNIE+ G+G ++ RAAG AK++ + K L KLPSG+ + I+ C AT+G
Sbjct: 68 MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127
Query: 60 QVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 116
V N K L +AG WLG RP VRGV MNP DHPHGGGEG++ + T PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187
Query: 117 G 117
G
Sbjct: 188 G 188
>AT2G44065.1 | Symbols: | Ribosomal protein L2 family |
chr2:18228860-18230368 FORWARD LENGTH=214
Length = 214
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 59
M +GT IHNIE+ G+G ++ RAAG AK++ + K L KLPSG+ + I+ C AT+G
Sbjct: 68 MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127
Query: 60 QVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 116
V N K L +AG WLG RP VRGV MNP DHPHGGGEG++ + T PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187
Query: 117 G 117
G
Sbjct: 188 G 188
>AT3G51190.1 | Symbols: | Ribosomal protein L2 family |
chr3:19016606-19017547 REVERSE LENGTH=260
Length = 260
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 15/113 (13%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 58
+P G I N+E+ +G G LARA+G A +IA +S T +KLPSG +++ C A +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167
Query: 59 GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 102
GQV G +K L +AG+ CW PVVRGV MNPV+HPHGGG
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGGN 216
>AT4G36130.1 | Symbols: | Ribosomal protein L2 family |
chr4:17097613-17098656 FORWARD LENGTH=258
Length = 258
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 15/113 (13%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATV 58
+P G I N+E +G G ARA+G A +IA + ++ +KLPSG +++ C A +
Sbjct: 107 IPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMI 166
Query: 59 GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 102
GQV G +K + +AG+ CW P VRGV MNPV+HPHGGG
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKYRVKRNCW----PKVRGVAMNPVEHPHGGGN 215
>AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family |
chr2:7837151-7838160 FORWARD LENGTH=258
Length = 258
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 7/109 (6%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 58
+P G + N+E +G G LARA+G A +IA S T +KLPSG +++ C A +
Sbjct: 107 IPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMI 166
Query: 59 GQVGNTGVNQKSLGRAGSKC--WLGKR---PVVRGVVMNPVDHPHGGGE 102
GQV G +K + +AG+ + KR P VRGV MNPV+HPHGGG
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGN 215