Jatropha Genome Database
- Jcr4U33242.10
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4U33242.10
(214 letters)
Database: Medicago_aa3.5
47,529 sequences; 14,043,872 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr3g035710.1 50S ribosomal protein L2, chloroplastic (AH... 227 4e-60
IMGA|Medtr4g034730.1 50S ribosomal protein L2-B, chloroplastic (... 226 7e-60
IMGA|Medtr4g051430.1 50S ribosomal protein L2-B, chloroplastic (... 178 2e-45
IMGA|Medtr8g102110.1 Ribosomal protein L2 (AHRD V1 ***- B2LMN5_G... 176 1e-44
IMGA|Medtr2g015360.1 60S ribosomal protein L2, mitochondrial (AH... 112 1e-25
IMGA|Medtr4g127750.1 50S ribosomal protein L2, chloroplastic (AH... 91 6e-19
IMGA|Medtr7g076940.1 60S ribosomal protein L2 (AHRD V1 ***- B6TG... 77 7e-15
IMGA|Medtr5g021800.1 60S ribosomal protein L2 (AHRD V1 ***- B6TG... 76 2e-14
IMGA|Medtr1g005730.1 Ribosomal protein L2 (Fragment) (AHRD V1 *-... 68 3e-12
IMGA|Medtr1g005200.1 Large ribosomal subunit protein 2 (Fragment... 68 3e-12
>IMGA|Medtr3g035710.1 50S ribosomal protein L2, chloroplastic (AHRD
V1 ***- Q2VEB7); contains Interpro domain(s) IPR005880
Ribosomal protein L2, bacterial-type
chr03_pseudomolecule_IMGAG_V3.5 11751294-11751827 F
EGN_Mt100125 20100825
Length = 142
Score = 227 bits (578), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 113/117 (96%), Positives = 115/117 (98%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
Query: 61 VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 117
VGN GVNQKSLGRAG+K WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP+TPWG
Sbjct: 61 VGNVGVNQKSLGRAGAKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWG 117
>IMGA|Medtr4g034730.1 50S ribosomal protein L2-B, chloroplastic
(AHRD V1 *-*- A0A398); contains Interpro domain(s)
IPR005880 Ribosomal protein L2, bacterial-type
chr04_pseudomolecule_IMGAG_V3.5 10857671-10859803 E
EGN_Mt100125 20100825
Length = 399
Score = 226 bits (576), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 112/117 (95%), Positives = 114/117 (97%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
MPLGTAIHNIEITLGKGGQLARA GAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 198 MPLGTAIHNIEITLGKGGQLARAPGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 257
Query: 61 VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 117
VGN GVNQKSLGRAG+K WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP+TPWG
Sbjct: 258 VGNVGVNQKSLGRAGAKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWG 314
>IMGA|Medtr4g051430.1 50S ribosomal protein L2-B, chloroplastic
(AHRD V1 ***- A0A398); contains Interpro domain(s)
IPR005880 Ribosomal protein L2, bacterial-type
chr04_pseudomolecule_IMGAG_V3.5 15206016-15203604 E
EGN_Mt100125 20100825
Length = 382
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/117 (79%), Positives = 96/117 (82%), Gaps = 20/117 (17%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN
Sbjct: 261 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN------- 313
Query: 61 VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 117
+G+K WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP+TPWG
Sbjct: 314 -------------SGAKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWG 357
>IMGA|Medtr8g102110.1 Ribosomal protein L2 (AHRD V1 ***-
B2LMN5_GUIAB); contains Interpro domain(s) IPR005880
Ribosomal protein L2, bacterial-type
chr08_pseudomolecule_IMGAG_V3.5 29672347-29671589 H
EGN_Mt100125 20100825
Length = 120
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/100 (91%), Positives = 92/100 (92%)
Query: 10 IEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNTGVNQK 69
EITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS EVRLISKNCSATV QVGN GVNQK
Sbjct: 13 FEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSEEVRLISKNCSATVEQVGNVGVNQK 72
Query: 70 SLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGR 109
SLGRA +K WLGKRPVVRGVVMN VDHPH GGEGRAPIGR
Sbjct: 73 SLGRAEAKRWLGKRPVVRGVVMNLVDHPHSGGEGRAPIGR 112
>IMGA|Medtr2g015360.1 60S ribosomal protein L2, mitochondrial (AHRD
V1 ***- P92812); contains Interpro domain(s) IPR005880
Ribosomal protein L2, bacterial-type
chr02_pseudomolecule_IMGAG_V3.5 4796398-4794449 E
EGN_Mt100125 20100825
Length = 175
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 79/122 (64%), Gaps = 6/122 (4%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 58
M +GT IHNIE+ G+GG+L RAAG AK++ KE SA ++LPSG +LI C ATV
Sbjct: 39 MRIGTIIHNIELNPGQGGKLVRAAGTNAKIL-KEPTSAYVLIQLPSGVKKLIDTRCRATV 97
Query: 59 GQVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPATP 115
G V N + L +AG WL +RPVVRGV MNPVDHPHGGGEG++ K TP
Sbjct: 98 GTVSNPTHGDRKLRKAGHSRWLNRRPVVRGVAMNPVDHPHGGGEGKSKSSGGWGKGSRTP 157
Query: 116 WG 117
WG
Sbjct: 158 WG 159
>IMGA|Medtr4g127750.1 50S ribosomal protein L2, chloroplastic (AHRD
V1 *-*- A6MMP9); contains Interpro domain(s) IPR005880
Ribosomal protein L2, bacterial-type
chr04_pseudomolecule_IMGAG_V3.5 44497787-44496934 H
EGN_Mt100125 20100825
Length = 162
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 48/51 (94%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS 51
MPLGTAIHNI+ITL KGGQLARAAGAVAKLIAKE KSATLKLPS EVRLIS
Sbjct: 90 MPLGTAIHNIKITLEKGGQLARAAGAVAKLIAKERKSATLKLPSEEVRLIS 140
>IMGA|Medtr7g076940.1 60S ribosomal protein L2 (AHRD V1 ***-
B6TGT0_MAIZE); contains Interpro domain(s) IPR002171
Ribosomal protein L2 chr07_pseudomolecule_IMGAG_V3.5
21247962-21249644 F EGN_Mt100125 20100825
Length = 259
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 15/113 (13%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATV 58
+P G I N+E +G G ARA+G A +I+ + ++ +KLPSG +++ +C A +
Sbjct: 107 IPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMI 166
Query: 59 GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 102
GQV G +K + +AG+ CW P VRGV MNPV+HPHGGG
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGN 215
>IMGA|Medtr5g021800.1 60S ribosomal protein L2 (AHRD V1 ***-
B6TGT0_MAIZE); contains Interpro domain(s) IPR002171
Ribosomal protein L2 chr05_pseudomolecule_IMGAG_V3.5
8236299-8234206 F EGN_Mt100125 20100825
Length = 258
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 15/113 (13%)
Query: 1 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATV 58
+P G I N+E +G G AR +G A +I+ + ++ +KLPSG +++ C A +
Sbjct: 107 IPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSECRAMI 166
Query: 59 GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 102
GQV G +K + +AG+ CW P VRGV MNPV+HPHGGG
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGN 215
>IMGA|Medtr1g005730.1 Ribosomal protein L2 (Fragment) (AHRD V1
*-*- Q6E2R6_9ASTE); contains Interpro domain(s)
IPR005880 Ribosomal protein L2, bacterial-type
chr01_pseudomolecule_IMGAG_V3.5 332018-332488 H
EGN_Mt100125 20100825
Length = 76
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 37/41 (90%)
Query: 36 KSATLKLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGS 76
+ ATLKLPSGEVRLISKN SATV QVGN GVNQKSLGRAG+
Sbjct: 34 RGATLKLPSGEVRLISKNSSATVRQVGNVGVNQKSLGRAGA 74
>IMGA|Medtr1g005200.1 Large ribosomal subunit protein 2 (Fragment)
(AHRD V1 *-** C0J3B1_9FABA); contains Interpro
domain(s) IPR005880 Ribosomal protein L2,
bacterial-type chr01_pseudomolecule_IMGAG_V3.5
193277-194092 H EGN_Mt100125 20100825
Length = 76
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 37/41 (90%)
Query: 36 KSATLKLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGS 76
+ ATLKLPSGEVRLISKN SATV QVGN GVNQKSLGRAG+
Sbjct: 34 RGATLKLPSGEVRLISKNSSATVRQVGNVGVNQKSLGRAGA 74