Jatropha Genome Database

Jcr4U33242.10
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jcr4U33242.10
         (644 letters)

Database: JAT_unigene 
           122,497 sequences; 49,272,789 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig00891  length=505  numreads=117  gene=isogroup00047  statu...   654   0.0  
tissues_GDVQYP002I5418                                                 70   3e-11

>contig00891  length=505  numreads=117  gene=isogroup00047
           status=isotig
          Length = 505

 Score =  654 bits (330), Expect = 0.0
 Identities = 344/351 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcccttaggcacggccatacataacatagaaatcacacttggaaagggtggacaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   atgcccttaggcacggccatacataacatagaaatcacacttggaaagggtggacaatta 65

                                                                       
Query: 61  gctagagctgcaggtgctgtagcgaaactgattgcaaaagaggggaaatcggccacatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  gctagagctgcaggtgctgtagcgaaactgattgcaaaagaggggaaatcggccacatta 125

                                                                       
Query: 121 aaattaccttctggggaggttcgtttaatatccaaaaactgctcagcaacagtcggacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aaattaccttctggggaggttcgtttaatatccaaaaactgctcagcaacagtcggacaa 185

                                                                       
Query: 181 gtaggcaatactggggtgaaccagaaaagtttgggtagagccggatctaaatgttggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gtaggcaatactggggtgaaccagaaaagtttgggtagagccggatctaaatgttggcta 245

                                                                       
Query: 241 ggtaagcgtcctgtagtaagaggagtagttatgaaccctgtagaccatccccatgggggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggtaagcgtcctgtagtaagaggagtagttatgaaccctgtagaccatccccatgggggt 305

                                                              
Query: 301 ggtgaagggagggccccaattggtagnnnnnnncccgcaaccccttggggg 351
           ||||||||||||||||||||||||||       ||||||||||||||||||
Sbjct: 306 ggtgaagggagggccccaattggtagaaaaaaacccgcaaccccttggggg 356


>tissues_GDVQYP002I5418
          Length = 374

 Score = 69.9 bits (35), Expect = 3e-11
 Identities = 54/59 (91%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                      
Query: 523 gacttgttggctaacgaagcttatgcaggctcaatgggactgcgattcttggaatctcc 581
           ||||||||||||||||||||| |||||||| | |||||||||||| ||||||| |||||
Sbjct: 252 gacttgttggctaacgaagctcatgcaggc-cgatgggactgcgagtcttggattctcc 309