Jatropha Genome Database

Jcr4U31589.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U31589.20 
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00650.1 | Symbols: RPS18 | ribosomal protein S18 | chrC:6791...   141   7e-35

>ATCG00650.1 | Symbols: RPS18 | ribosomal protein S18 |
           chrC:67917-68222 FORWARD LENGTH=101
          Length = 101

 Score =  141 bits (356), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 76/82 (92%)

Query: 20  PPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLSLKQQRLITIAIKQARILSSLPFLN 79
           PPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR++LKQQRLITIAIKQARILS LPFLN
Sbjct: 20  PPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQRLITIAIKQARILSLLPFLN 79

Query: 80  NEKQFEKSELVTITTDLRTRKK 101
           N+KQFE+SE    TT LRTRKK
Sbjct: 80  NQKQFERSESTPRTTSLRTRKK 101