Jatropha Genome Database

Jcr4U31589.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U31589.20 
         (116 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g034710.1 ATP synthase subunit a chloroplastic (AHRD ...   102   6e-23
IMGA|Medtr4g051350.1 30S ribosomal protein S18, chloroplastic (A...   102   7e-23
IMGA|AC233576_23.1 30S ribosomal protein S18, chloroplastic (AHR...   100   2e-22

>IMGA|Medtr4g034710.1 ATP synthase subunit a chloroplastic (AHRD V1
           *-*- B8R490_TRISU); contains Interpro domain(s)
           IPR000568  ATPase, F0 complex, subunit A
           chr04_pseudomolecule_IMGAG_V3.5 10852351-10855979 E
           EGN_Mt100125 20100825
          Length = 467

 Score =  102 bits (253), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 55/59 (93%)

Query: 21  PIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLSLKQQRLITIAIKQARILSSLPFLN 79
           PIQSGDRIDY+NMSL+ RFIS QGKILSRRVNR +LKQQRLITIAIKQARILS LPF++
Sbjct: 397 PIQSGDRIDYKNMSLLYRFISRQGKILSRRVNRSTLKQQRLITIAIKQARILSLLPFVS 455


>IMGA|Medtr4g051350.1 30S ribosomal protein S18, chloroplastic (AHRD
           V1 *-*- P49169); contains Interpro domain(s)  IPR001648 
           Ribosomal protein S18 chr04_pseudomolecule_IMGAG_V3.5
           15185471-15186932 E EGN_Mt100125 20100825
          Length = 209

 Score =  102 bits (253), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 55/59 (93%)

Query: 21  PIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLSLKQQRLITIAIKQARILSSLPFLN 79
           PIQSGDRIDY+NMSL+ RFIS QGKILSRRVNR +LKQQRLITIAIKQARILS LPF++
Sbjct: 106 PIQSGDRIDYKNMSLLYRFISRQGKILSRRVNRSTLKQQRLITIAIKQARILSLLPFVS 164


>IMGA|AC233576_23.1 30S ribosomal protein S18, chloroplastic (AHRD
           V1 *-*- A0ZZ57); contains Interpro domain(s)  IPR001648 
           Ribosomal protein S18 AC233576.3 100686-98495 E
           EGN_Mt100125 20100825
          Length = 379

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 54/59 (91%)

Query: 21  PIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLSLKQQRLITIAIKQARILSSLPFLN 79
           PIQSGDRIDY+NMSL+ + IS QGKILSRRVNR +LKQQRLITIAIKQARILS LPF++
Sbjct: 288 PIQSGDRIDYKNMSLLYQVISHQGKILSRRVNRSTLKQQRLITIAIKQARILSLLPFVS 346