Jatropha Genome Database

Jcr4U31230.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U31230.10 
         (218 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00150.1 | Symbols: ATPI | ATPase, F0 complex, subunit A prot...   242   1e-64

>ATCG00150.1 | Symbols: ATPI | ATPase, F0 complex, subunit A protein
           | chrC:14021-14770 REVERSE LENGTH=249
          Length = 249

 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/124 (94%), Positives = 121/124 (97%)

Query: 13  VLEFIRDVSKTQIGEEYGSWVPFIGTMFLFIFVSNWAGALLPWKIIELPHGELAAPTNDI 72
           VLEFIRDVSKTQIGEEYG WVPFIGT+FLFIFVSNW+GALLPWKII+LP GELAAPTNDI
Sbjct: 77  VLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIQLPQGELAAPTNDI 136

Query: 73  NTTVALALLTSIAYFYAGLRKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNI 132
           NTTVALALLTS+AYFYAGL KKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNI
Sbjct: 137 NTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNI 196

Query: 133 LADE 136
           LADE
Sbjct: 197 LADE 200