Jatropha Genome Database

Jcr4U31230.10
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U31230.10 
         (218 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g034710.1 ATP synthase subunit a chloroplastic (AHRD ...   242   1e-64
IMGA|Medtr4g051110.1 ATP synthase subunit a chloroplastic (AHRD ...   242   1e-64
IMGA|Medtr3g029550.1 ATP synthase subunit a chloroplastic (AHRD ...   238   2e-63
IMGA|Medtr7g116680.1 ATP synthase subunit a chloroplastic (AHRD ...   189   2e-48
IMGA|Medtr2g059350.1 ATP synthase subunit a chloroplastic (AHRD ...   109   1e-24
IMGA|Medtr4g108470.1 ATP synthase subunit a chloroplastic (AHRD ...   101   4e-22
IMGA|Medtr6g025470.1 ATP synthase subunit a chloroplastic (AHRD ...    90   8e-19
IMGA|Medtr6g025340.1 ATP synthase subunit a chloroplastic (AHRD ...    62   3e-10

>IMGA|Medtr4g034710.1 ATP synthase subunit a chloroplastic (AHRD V1
           *-*- B8R490_TRISU); contains Interpro domain(s)
           IPR000568  ATPase, F0 complex, subunit A
           chr04_pseudomolecule_IMGAG_V3.5 10852351-10855979 E
           EGN_Mt100125 20100825
          Length = 467

 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/124 (92%), Positives = 120/124 (96%)

Query: 13  VLEFIRDVSKTQIGEEYGSWVPFIGTMFLFIFVSNWAGALLPWKIIELPHGELAAPTNDI 72
           VLEFIRDVSKTQIGEEYG WVPFIGT+FLFIFVSNW+GALLPWKII+LPHGELAAPTNDI
Sbjct: 73  VLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIKLPHGELAAPTNDI 132

Query: 73  NTTVALALLTSIAYFYAGLRKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNI 132
           NTTVALALLTS+AYFYAG+ KKGL YF KYIQPTPILLPINILEDFTKPLSLSFRLFGNI
Sbjct: 133 NTTVALALLTSVAYFYAGISKKGLAYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNI 192

Query: 133 LADE 136
           LADE
Sbjct: 193 LADE 196


>IMGA|Medtr4g051110.1 ATP synthase subunit a chloroplastic (AHRD V1
           *-*- B8R490_TRISU); contains Interpro domain(s)
           IPR005706  Ribosomal protein S2, bacterial-type
           chr04_pseudomolecule_IMGAG_V3.5 15113402-15108879 E
           EGN_Mt100125 20100825
          Length = 644

 Score =  242 bits (617), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/124 (92%), Positives = 120/124 (96%)

Query: 13  VLEFIRDVSKTQIGEEYGSWVPFIGTMFLFIFVSNWAGALLPWKIIELPHGELAAPTNDI 72
           VLEFIRDVSKTQIGEEYG WVPFIGT+FLFIFVSNW+GALLPWKII+LPHGELAAPTNDI
Sbjct: 307 VLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIKLPHGELAAPTNDI 366

Query: 73  NTTVALALLTSIAYFYAGLRKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNI 132
           NTTVALALLTS+AYFYAG+ KKGL YF KYIQPTPILLPINILEDFTKPLSLSFRLFGNI
Sbjct: 367 NTTVALALLTSVAYFYAGISKKGLAYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNI 426

Query: 133 LADE 136
           LADE
Sbjct: 427 LADE 430


>IMGA|Medtr3g029550.1 ATP synthase subunit a chloroplastic (AHRD V1
           ***- B8R490_TRISU); contains Interpro domain(s)
           IPR000568  ATPase, F0 complex, subunit A
           chr03_pseudomolecule_IMGAG_V3.5 8728107-8727415 E
           EGN_Mt100125 20100825
          Length = 214

 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/124 (91%), Positives = 119/124 (95%)

Query: 13  VLEFIRDVSKTQIGEEYGSWVPFIGTMFLFIFVSNWAGALLPWKIIELPHGELAAPTNDI 72
           VLEFIRDVSKTQIGEEYG WVPFIGT+FLFIFVSNW+GALLPWKII+LPHGELAAPTNDI
Sbjct: 42  VLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIKLPHGELAAPTNDI 101

Query: 73  NTTVALALLTSIAYFYAGLRKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNI 132
           NT VALALLTS+AYFYAG+ KKGL YF KYIQPTPILLPINILEDFTKPLSLSFRLFGNI
Sbjct: 102 NTIVALALLTSVAYFYAGISKKGLAYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNI 161

Query: 133 LADE 136
           LADE
Sbjct: 162 LADE 165


>IMGA|Medtr7g116680.1 ATP synthase subunit a chloroplastic (AHRD V1
           ***- B8R490_TRISU); contains Interpro domain(s)
           IPR000568  ATPase, F0 complex, subunit A
           chr07_pseudomolecule_IMGAG_V3.5 37948042-37944921 E
           EGN_Mt100125 20100825
          Length = 262

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 96/104 (92%)

Query: 13  VLEFIRDVSKTQIGEEYGSWVPFIGTMFLFIFVSNWAGALLPWKIIELPHGELAAPTNDI 72
           VLEFIRDVSKTQIGEEYG  VPFIGT+FLFIFVSNW+GALLPWKII+LPHGEL APTNDI
Sbjct: 123 VLEFIRDVSKTQIGEEYGLRVPFIGTLFLFIFVSNWSGALLPWKIIKLPHGELTAPTNDI 182

Query: 73  NTTVALALLTSIAYFYAGLRKKGLGYFSKYIQPTPILLPINILE 116
           NTTVALALLTS+AY Y G+ KKGL YF KYIQPTPILLPINILE
Sbjct: 183 NTTVALALLTSVAYLYVGISKKGLAYFGKYIQPTPILLPINILE 226


>IMGA|Medtr2g059350.1 ATP synthase subunit a chloroplastic (AHRD V1
           *-*- B8R490_TRISU); contains Interpro domain(s)
           IPR019378  GDP-fucose protein O-fucosyltransferase
           chr02_pseudomolecule_IMGAG_V3.5 18357695-18349896 E
           EGN_Mt100125 20100825
          Length = 698

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/53 (92%), Positives = 52/53 (98%)

Query: 13  VLEFIRDVSKTQIGEEYGSWVPFIGTMFLFIFVSNWAGALLPWKIIELPHGEL 65
           VLEFIRDVSKTQIGEEYG WVPFIGT+FLFIFVSNW+GALLPWKII+LPHGEL
Sbjct: 638 VLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIKLPHGEL 690


>IMGA|Medtr4g108470.1 ATP synthase subunit a chloroplastic (AHRD V1
           ***- B7T434_9ROSI); contains Interpro domain(s)
           IPR000568  ATPase, F0 complex, subunit A
           chr04_pseudomolecule_IMGAG_V3.5 37433322-37432696 H
           EGN_Mt100125 20100825
          Length = 132

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 62/112 (55%), Gaps = 43/112 (38%)

Query: 25  IGEEYGSWVPFIGTMFLFIFVSNWAGALLPWKIIELPHGELAAPTNDINTTVALALLTSI 84
           IGEEYG WVPFIGT+FLFIFVSN                                     
Sbjct: 15  IGEEYGPWVPFIGTLFLFIFVSN------------------------------------- 37

Query: 85  AYFYAGLRKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE 136
                 L + GL YF KYIQPTPILLPINILEDFTK LSLSFRLF NILADE
Sbjct: 38  ------LFRIGLAYFDKYIQPTPILLPINILEDFTKFLSLSFRLFENILADE 83


>IMGA|Medtr6g025470.1 ATP synthase subunit a chloroplastic (AHRD V1
           ***- B8R490_TRISU); contains Interpro domain(s)
           IPR000568  ATPase, F0 complex, subunit A
           chr06_pseudomolecule_IMGAG_V3.5 5897732-5899361 H
           EGN_Mt100125 20100825
          Length = 137

 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 58/114 (50%), Gaps = 35/114 (30%)

Query: 23  TQIGEEYGSWVPFIGTMFLFIFVSNWAGALLPWKIIELPHGELAAPTNDINTTVALALLT 82
            +IGEEYG WVPFIGT+                                        L  
Sbjct: 10  VEIGEEYGQWVPFIGTL-----------------------------------FFFFFLEF 34

Query: 83  SIAYFYAGLRKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE 136
             AYFY G+  KGL YF KYIQ TPILL INILEDFTK LSLSFRLF NIL DE
Sbjct: 35  VRAYFYHGISIKGLTYFGKYIQLTPILLTINILEDFTKSLSLSFRLFKNILVDE 88


>IMGA|Medtr6g025340.1 ATP synthase subunit a chloroplastic (AHRD V1
           ***- D2KLS6_OLEEU); contains Interpro domain(s)
           IPR000568  ATPase, F0 complex, subunit A
           chr06_pseudomolecule_IMGAG_V3.5 5850043-5849738 H
           EGN_Mt100125 20100825
          Length = 101

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 33/40 (82%)

Query: 92  RKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGN 131
           +KKGL  F KYIQPTPI+L IN+LEDFTKP  LSFR+F N
Sbjct: 8   KKKGLSDFGKYIQPTPIILLINMLEDFTKPFLLSFRIFIN 47