Jatropha Genome Database
- Jcr4U31230.10
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jcr4U31230.10
(657 letters)
Database: JAT_unigene
122,497 sequences; 49,272,789 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
contig00003 length=10213 numreads=756 gene=isogroup00001 sta... 1166 0.0
leaf_GE9D68U01D27UM 111 8e-24
tissues_GDVQYP002GWRIH 54 2e-06
leaf_GE9D68U01D3679 52 7e-06
>contig00003 length=10213 numreads=756 gene=isogroup00001
status=ig_thresh
Length = 10213
Score = 1166 bits (588), Expect = 0.0
Identities = 612/621 (98%), Gaps = 1/621 (0%)
Strand = Plus / Minus
Query: 37 gtccttgaattcattcgggatgtgagcaaaactcagattggagaggaatatggctcatgg 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2837 gtccttgaattcattcgggatgtgagcaaaactcagattggagaggaatatggctcatgg 2778
Query: 97 gtcccctttattggaactatgtttttatttatttttgtttctaattgggcgggggcgctt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 gtcccctttattggaactatgtttttatttatttttgtttctaattgggcgggggcgctt 2718
Query: 157 ttgccttggaagatcatagagttacctcatggggagttagccgcacctacgaatgatata 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2717 ttgccttggaagatcatagagttacctcatggggagttagccgcacctacgaatgatata 2658
Query: 217 aatactaccgttgctttagctttacttacgtcaatagcatatttttatgcgggccttagn 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2657 aatactaccgttgctttagctttacttacgtcaatagcatatttttatgcgggccttaga 2598
Query: 277 nnnnnnggattaggttatttcagcaaatacattcagccaactccaatccttttacccatt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2597 aaaaaaggattaggttatttcagcaaatacattcagccaactccaatccttttacccatt 2538
Query: 337 aacattttagaagatttcacaaaacctttatcacttagctttcgacttttcggaaatata 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2537 aacattttagaagatttcacaaaacctttatcacttagctttcgacttttcggaaatata 2478
Query: 397 ttagcggacgaattagtagttgttgttcttgtttctttagtaccttcagtggttcctata 456
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2477 ttagcggacgaattagtagttgttgttcttgtttctttagtacctttagtggttcctata 2418
Query: 457 cctgtcatgttcctttggattatttacaagcggtattcaagctcttatttttgcaacttt 516
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 cctgtcatgttcc-ttggattatttacaagcggtattcaagctcttatttttgcaacttt 2359
Query: 517 agccgcggcttatataggcgaatccatggaggggcatcattgactaattttcgaaatagc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2358 agccgcggcttatataggcgaatccatggaggggcatcattgactaattttcgaaatagc 2299
Query: 577 ttagtgcaaggcaatctatgccttgttcaagataatctacttatacttaatgaacataaa 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2298 ttagtgcaaggcaatctatgccttgttcaagataatctacttatacttaatgaacataaa 2239
Query: 637 ttacttaatcaacataaatag 657
|||||||||||||||||||||
Sbjct: 2238 ttacttaatcaacataaatag 2218
>leaf_GE9D68U01D27UM
Length = 353
Score = 111 bits (56), Expect = 8e-24
Identities = 89/98 (90%), Gaps = 3/98 (3%)
Strand = Plus / Minus
Query: 219 tactaccgttgctttagctttacttacgtcaatagcatatttttatgcgggccttagnnn 278
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 353 tactaccgttgctttagctt-acttacgtcaatagcatatttttatgcgggccttag-aa 296
Query: 279 nnnnggattaggttatttcagcaaatacattcagccaa 316
|||||||| |||||||||||||||||||||||||
Sbjct: 295 aaaaggattagg-tatttcagcaaatacattcagccaa 259
>tissues_GDVQYP002GWRIH
Length = 232
Score = 54.0 bits (27), Expect = 2e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 326 ttttacccattaacattttagaagatttcac 356
||||| |||||||||||||||||||||||||
Sbjct: 202 ttttaaccattaacattttagaagatttcac 232
>leaf_GE9D68U01D3679
Length = 212
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 44 aattcattcgggatgtgagcaaaact 69
||||||||||||||||||||||||||
Sbjct: 212 aattcattcgggatgtgagcaaaact 187