Jatropha Genome Database

Jcr4U29862.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U29862.20 
         (229 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28890.m000006 β-carboxyltransferase (β-CT) subunit of ...   293   6e-80
30185.m000928 conserved hypothetical protein                          245   1e-65

>28890.m000006 β-carboxyltransferase (β-CT) subunit of
           Het-ACCase
          Length = 274

 Score =  293 bits (749), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 136/139 (97%), Positives = 138/139 (99%)

Query: 84  HLWVQCENCYGLNYKKFLKSRMNICEQCGYHLKMSSSDRIELSIDLGTWNPMDEDMVSLD 143
           HLWVQCENCYGLNYKKF KSRMNICEQCGYHLKMSSSDRIELSIDLGTW+PMDEDMVSLD
Sbjct: 6   HLWVQCENCYGLNYKKFFKSRMNICEQCGYHLKMSSSDRIELSIDLGTWDPMDEDMVSLD 65

Query: 144 PIEFHSEEEPYKDRIDSYQKKTGLTEAVQTGTGQLNGIPVAIGVMDFQFMGGSMGSVVGE 203
           PIEFHSEEEPYKDRIDSYQ+KTGLTEAVQTGTGQLNGIPVAIGVMDFQFMGGSMGSVVGE
Sbjct: 66  PIEFHSEEEPYKDRIDSYQRKTGLTEAVQTGTGQLNGIPVAIGVMDFQFMGGSMGSVVGE 125

Query: 204 KITRLIEYATNKFLPLILV 222
           KITRLIEYATNKFLPLILV
Sbjct: 126 KITRLIEYATNKFLPLILV 144


>30185.m000928 conserved hypothetical protein
          Length = 690

 Score =  245 bits (625), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/216 (62%), Positives = 147/216 (68%), Gaps = 14/216 (6%)

Query: 8   WNNYINSCIDNYLRSQICID---LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 64
           W NYINSCI +YLRSQ+CID   L                                    
Sbjct: 404 WKNYINSCIGSYLRSQVCIDSYILTGSYNYSESSIYSYICGESGNSNESQSSSLRTSTNG 463

Query: 65  XDLTIRESSNDLDIT--QKYKHLWVQCENCYGLNYKKFLKSRMNICEQCGYHLKMSSSDR 122
            DLT RESSNDLDIT  QKYKHLWVQCENCYGLNYKKF KSRMNICEQCGYHLKMSSSDR
Sbjct: 464 SDLTRRESSNDLDITITQKYKHLWVQCENCYGLNYKKFFKSRMNICEQCGYHLKMSSSDR 523

Query: 123 IELSIDLGTWNPMDEDMVSLDPIEFHSEEEPYKDRIDSYQKKTGLTEAVQTGTGQLNGIP 182
           IELSIDLGTW+PMDEDMVSLDPIEFHSEEEPYKDRIDSYQ+KTGLTEA++TGT  L+G  
Sbjct: 524 IELSIDLGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIETGTVCLSG-- 581

Query: 183 VAIGVMDFQFMGGSMGSVVGEKITR-LIEYATNKFL 217
              GV   +   GS+  +   KI+  L +Y +NK L
Sbjct: 582 ---GV---RMQEGSLSLMQMAKISSALYDYQSNKKL 611