Jatropha Genome Database

Jcr4U29862.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U29862.20 
         (229 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00500.1 | Symbols: ACCD | acetyl-CoA carboxylase carboxyl tr...   278   3e-75

>ATCG00500.1 | Symbols: ACCD | acetyl-CoA carboxylase carboxyl
           transferase subunit beta | chrC:57075-58541 FORWARD
           LENGTH=488
          Length = 488

 Score =  278 bits (710), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 140/222 (63%), Positives = 160/222 (72%), Gaps = 3/222 (1%)

Query: 1   MSDTKYSWNNYINSCIDNYLRSQICIDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           + DTKY+  N+INSCID+Y RS ICID                                 
Sbjct: 143 IKDTKYNCTNHINSCIDSYFRSYICIDNNFLIDSNNFNESYIYNFICSESGKIRESKNYK 202

Query: 61  XXXXXDLTIRESSNDLDITQKYKHLWVQCENCYGLNYKKFLKSRMNICEQCGYHLKMSSS 120
                + +   SS D DITQ Y  LW+QC+NCYGL YKK    +MN+CEQCG++LKMSSS
Sbjct: 203 IRTNRNRSNLISSKDFDITQNYNQLWIQCDNCYGLMYKKV---KMNVCEQCGHYLKMSSS 259

Query: 121 DRIELSIDLGTWNPMDEDMVSLDPIEFHSEEEPYKDRIDSYQKKTGLTEAVQTGTGQLNG 180
           +RIELSID GTWNPMDEDMVS DPI+FHS+EEPYK+RIDS QK TGLT+AVQTGTGQLNG
Sbjct: 260 ERIELSIDPGTWNPMDEDMVSADPIKFHSKEEPYKNRIDSAQKTTGLTDAVQTGTGQLNG 319

Query: 181 IPVAIGVMDFQFMGGSMGSVVGEKITRLIEYATNKFLPLILV 222
           IPVA+GVMDF+FMGGSMGSVVGEKITRLIEYATN+ LPLILV
Sbjct: 320 IPVALGVMDFRFMGGSMGSVVGEKITRLIEYATNQCLPLILV 361