Jatropha Genome Database

Jcr4U29862.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U29862.20 
         (229 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g13780.1                                                        64   2e-10

>Glyma20g13780.1 
          Length = 143

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 41/54 (75%), Gaps = 2/54 (3%)

Query: 116 KMSSSDRIELSIDLGTWNPMDEDMVSLDPIEFHSEEEPYKDRIDSYQKKTGLTE 169
           KM SS+RI+LSI+ GTWNPMDEDMVSLDPIEF +++   K  I+S   ++ L +
Sbjct: 81  KMGSSNRIDLSINSGTWNPMDEDMVSLDPIEFKTQKNDVK--IESTNSRSRLKK 132