Jatropha Genome Database

Jcr4U29440.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U29440.10 /partial
         (113 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029875001 assembled CDS                                       208   5e-55
GSVIVT01037398001 assembled CDS                                       138   4e-34
GSVIVT01032240001 assembled CDS                                        72   4e-14
GSVIVT01017636001 assembled CDS                                        72   7e-14

>GSVIVT01029875001 assembled CDS
          Length = 224

 Score =  208 bits (529), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 102/113 (90%), Positives = 105/113 (92%)

Query: 1   FVILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGS 60
           FVILSGYSIL NEEL+ILNSW+Q+FLYNL DTIKAFSILLLTDLCIGFHSPH WEL IGS
Sbjct: 112 FVILSGYSILGNEELLILNSWIQQFLYNLGDTIKAFSILLLTDLCIGFHSPHVWELTIGS 171

Query: 61  VYKDFGFAHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 113
           VYKDFGFAHNDQIIS LVSTFPVILDTI KYW FRYLNRVS SLVVIYHSMND
Sbjct: 172 VYKDFGFAHNDQIISSLVSTFPVILDTILKYWTFRYLNRVSSSLVVIYHSMND 224


>GSVIVT01037398001 assembled CDS
          Length = 100

 Score =  138 bits (348), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 72/80 (90%)

Query: 34  KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDTIFKYWI 93
           K+F   LLTDL IGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTF +ILDTIFKYWI
Sbjct: 20  KSFFYSLLTDLSIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFSIILDTIFKYWI 79

Query: 94  FRYLNRVSPSLVVIYHSMND 113
           FRYLNRVS SLVVIY S++ 
Sbjct: 80  FRYLNRVSSSLVVIYPSIHS 99


>GSVIVT01032240001 assembled CDS
          Length = 415

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 55/88 (62%)

Query: 24  EFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPV 83
           + + N+SDT KAF I+L+TD+ +G+HS  GW+ ++  V + +G   +   I+  V   PV
Sbjct: 325 KIINNISDTGKAFLIILITDIFLGYHSESGWQTLLEVVVEHYGLEVDQSAITIFVCLIPV 384

Query: 84  ILDTIFKYWIFRYLNRVSPSLVVIYHSM 111
           ++D   K W+F++L R+SP +  I+  M
Sbjct: 385 VIDACVKLWLFKFLPRLSPRVSNIFREM 412


>GSVIVT01017636001 assembled CDS
          Length = 121

 Score = 71.6 bits (174), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/37 (91%), Positives = 37/37 (100%)

Query: 1   FVILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFS 37
           FVILSGYSILSNEEL+ILNSW+Q+FLYNLSDTIKAFS
Sbjct: 81  FVILSGYSILSNEELLILNSWIQQFLYNLSDTIKAFS 117