Jatropha Genome Database

Jcr4U29440.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U29440.10 /partial
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00530.1 | Symbols: YCF10 | CemA-like proton extrusion protei...   207   2e-54
AT4G31040.1 | Symbols:  | CemA-like proton extrusion protein-rel...    74   3e-14

>ATCG00530.1 | Symbols: YCF10 | CemA-like proton extrusion
           protein-related | chrC:60741-61430 FORWARD LENGTH=229
          Length = 229

 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/113 (88%), Positives = 106/113 (93%)

Query: 1   FVILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGS 60
           FVILSGYS    E+L ILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIG 
Sbjct: 117 FVILSGYSFWGKEKLFILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGY 176

Query: 61  VYKDFGFAHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 113
           +YKDFGFAH +QI+SGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYH++ND
Sbjct: 177 IYKDFGFAHYEQILSGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHAIND 229


>AT4G31040.1 | Symbols:  | CemA-like proton extrusion
           protein-related | chr4:15111811-15113881 REVERSE
           LENGTH=438
          Length = 438

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 54/88 (61%)

Query: 24  EFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPV 83
           + + N+SDT KAF I+L+TD+ +G+HS  GWE ++  + + +G       I+  +   PV
Sbjct: 348 KIINNISDTGKAFLIILITDIFLGYHSESGWETLLEIIMEHYGLEVEQSTITIFICLVPV 407

Query: 84  ILDTIFKYWIFRYLNRVSPSLVVIYHSM 111
           I+D   K W+F++L R+SP +  I+  M
Sbjct: 408 IMDACVKLWLFKFLPRLSPRVSNIFQEM 435