Jatropha Genome Database

Jcr4U29440.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U29440.10 /partial
         (113 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g034760.1 Apocytochrome f (AHRD V1 *-*- C7BF85_9POAL)...   191   7e-50
IMGA|Medtr4g050860.1 Apocytochrome F (AHRD V1 *--- C3KEH7_CERDE)...   190   2e-49
IMGA|Medtr5g019520.1 Chloroplast envelope membrane protein (AHRD...    96   7e-21

>IMGA|Medtr4g034760.1 Apocytochrome f (AHRD V1 *-*- C7BF85_9POAL);
           contains Interpro domain(s)  IPR002325  Cytochrome f
           chr04_pseudomolecule_IMGAG_V3.5 10864824-10862617 E
           EGN_Mt100125 20100825
          Length = 543

 Score =  191 bits (486), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 92/102 (90%), Positives = 96/102 (94%)

Query: 1   FVILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGS 60
           F+ILSGYSI  N+ELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHS HGWEL+IGS
Sbjct: 117 FLILSGYSIRGNQELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSTHGWELIIGS 176

Query: 61  VYKDFGFAHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSP 102
           VYKDFGF  N+QIISGLVSTFPVILDTI KYWIFRYLNRVSP
Sbjct: 177 VYKDFGFTQNNQIISGLVSTFPVILDTILKYWIFRYLNRVSP 218


>IMGA|Medtr4g050860.1 Apocytochrome F (AHRD V1 *--- C3KEH7_CERDE);
           contains Interpro domain(s)  IPR002325  Cytochrome f
           chr04_pseudomolecule_IMGAG_V3.5 15020637-15016832 E
           EGN_Mt100125 20100825
          Length = 751

 Score =  190 bits (482), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/102 (90%), Positives = 96/102 (94%)

Query: 1   FVILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGS 60
           F+ILSGYSI  N+ELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHS HGWEL+IGS
Sbjct: 343 FLILSGYSIRGNQELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSTHGWELIIGS 402

Query: 61  VYKDFGFAHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSP 102
           VYKDFGF  N+QIISGLVSTFPVILDTI KYWIFRYLNRVSP
Sbjct: 403 VYKDFGFTQNNQIISGLVSTFPVILDTILKYWIFRYLNRVSP 444


>IMGA|Medtr5g019520.1 Chloroplast envelope membrane protein (AHRD V1
           ***- B8R478_TRISU); contains Interpro domain(s)
           IPR004282  CemA chr05_pseudomolecule_IMGAG_V3.5
           7127693-7128380 E EGN_Mt100125 20100825
          Length = 172

 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/53 (86%), Positives = 49/53 (92%)

Query: 1   FVILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHG 53
           F+ILSGYS+  N+ELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHS H 
Sbjct: 117 FLILSGYSVRGNQELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSTHQ 169