Jatropha Genome Database

Jcr4U29398.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U29398.20 
         (303 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030958001 assembled CDS                                        57   9e-09
GSVIVT01008740001 assembled CDS                                        51   6e-07

>GSVIVT01030958001 assembled CDS
          Length = 93

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 1  MAKNGPHLKSGQVIIVRMDSVVIRSAKPYLAAPGATV 37
          +AKN PHLKS QV+IV++DSVVIRS+KPYLA  GA +
Sbjct: 30 IAKNEPHLKSSQVLIVQVDSVVIRSSKPYLATLGAAL 66


>GSVIVT01008740001 assembled CDS
          Length = 1565

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 183  LEEAICYRAILLGITRASLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
            L + + YR  L+ ITR  +N      +   SF+ET  +L  AA+    D+L+G+ EN++L
Sbjct: 1202 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDFLRGVTENIML 1261

Query: 241  GGMIPGGTG 249
            G + P GTG
Sbjct: 1262 GQLAPIGTG 1270