Jatropha Genome Database

Jcr4U29398.20
Show Alignment: 
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jcr4U29398.20 
         (912 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29923.m000786 DNA-directed RNA polymerase beta chain, putative       1193   0.0  
29174.m000010 DNA-directed RNA polymerase beta chain, putative       1170   0.0  
29852.m001988 30S ribosomal protein S2, putative                      416   e-116
60340.m000003 DNA-directed RNA polymerase beta chain, putative        313   1e-84
30155.m001629 DNA-directed RNA polymerase beta chain, putative        192   3e-48

>29923.m000786 DNA-directed RNA polymerase beta chain, putative
          Length = 1083

 Score = 1193 bits (602), Expect = 0.0
 Identities = 725/766 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggccaaaaacggaccccatctaaaatcgggtcaagttataattgttcgcatggactcg 60
           ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| | ||| 
Sbjct: 1   atggccaaaaacggaccacatctaaaatcgggtcaagttataattattcacattggctct 60

                                                                       
Query: 61  gtagtaatacgatcagcaaagccctatttggccgctccaggagcaaccgttcatggccat 120
           ||||||||| |||| || ||||| ||||||||| |||| |||||||||||||||||||||
Sbjct: 61  gtagtaataagatccgctaagccttatttggccactccgggagcaaccgttcatggccat 120

                                                                       
Query: 121 tatggagaaatcttttacgaaggagatacattagttacatttttatatgaaaaatcgaga 180
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 121 tatggagaaatcctttacgaaggagatacattagttacatttatatatgaaaagtcgaga 180

                                                                       
Query: 181 tctggtgatataacgcagggtcttccaaaagtggaacaagtgttagaagtgcgctcaatt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 181 tctggtgatataacgcagggtcttccaaaagtagaacaagtgttagaagtgcgttcaatt 240

                                                                       
Query: 241 gattcaatatcgataagcctagaaaagagagttgagggttggaacgagtgtataacaaga 300
           |||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||
Sbjct: 241 gattcaatatcgataaacctagaaaagagagttgggggttggaacgaatgtataccaaga 300

                                                                       
Query: 301 attcttggaattccttggggattcttgattggtgctgaactaactatagtgcaaagtcgt 360
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| 
Sbjct: 301 attcttggaattccttggggattcttgattggtactgagctaactatagtgcaaagtcgc 360

                                                                       
Query: 361 atctctttggttaataagattcaaaaggtttatcgatcccaaggagtgcagatacataat 420
           |||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct: 361 atctctttggttaataagatccaaagggtttatcgatcccaaggggtgcagatccataat 420

                                                                       
Query: 421 aggcatatagaaattattgtacgtcaaataacatccaaagttttggtttcagaagacgga 480
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 421 aggcatatagaaattattgtacgtcaaataacatcaaaagtattggtttcagaagacgga 480

                                                                       
Query: 481 atgtcaaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgtctaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 540

                                                                       
Query: 541 cgcgctttagaagaagccatctgttatcgagccatattattaggaataacgagagcatct 600
           || ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| 
Sbjct: 541 cgtgctttggaagaagccatctgttaccgagccatattattgggaataacgagagcatcc 600

                                                                       
Query: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgcgttttagca 660
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgtgttttagca 660

                                                                       
Query: 661 aaagccgctctccgcggtcgtatcgattggttgaaaggcctgaaagaaaacgttgttcta 720
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 661 aaagccgctctccgcggtcgtatcgattggttgaaaggcctgaaagaaaaagttgttcta 720

                                                         
Query: 721 ggtggtatgatacccggtggtaccggattcaaaggattagtgcaag 766
           || ||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 721 ggcggtatgatacccgttggtaccggattcaaaggattagtacaag 766


>29174.m000010 DNA-directed RNA polymerase beta chain, putative
          Length = 1155

 Score = 1170 bits (590), Expect = 0.0
 Identities = 722/766 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggccaaaaacggaccccatctaaaatcgggtcaagttataattgttcgcatggactcg 60
           ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| | ||| 
Sbjct: 1   atggccaaaaacggaccacatctaaaatcgggtcaagttataattattcacattggctct 60

                                                                       
Query: 61  gtagtaatacgatcagcaaagccctatttggccgctccaggagcaaccgttcatggccat 120
           ||||||||| |||| || ||||| ||||||||| |||| |||||||||||||||||||||
Sbjct: 61  gtagtaataagatccgctaagccttatttggccactccgggagcaaccgttcatggccat 120

                                                                       
Query: 121 tatggagaaatcttttacgaaggagatacattagttacatttttatatgaaaaatcgaga 180
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 121 tatggagaaatcctttacgaaggagatacattagttacatttatatatgaaaagtcgaga 180

                                                                       
Query: 181 tctggtgatataacgcagggtcttccaaaagtggaacaagtgttagaagtgcgctcaatt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||
Sbjct: 181 tctggtgatataacgcagggtcttccaaaagtagaacaagtgttagaagtgcattcaatt 240

                                                                       
Query: 241 gattcaatatcgataagcctagaaaagagagttgagggttggaacgagtgtataacaaga 300
           |||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||
Sbjct: 241 gattcaatatcgataaacctagaaaagagagttgggggttggaacgaatgtataccaaga 300

                                                                       
Query: 301 attcttggaattccttggggattcttgattggtgctgaactaactatagtgcaaagtcgt 360
           |||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| 
Sbjct: 301 attcttggaattccttggggattcttgattggtattgagctaactatagtgcaaagtcgc 360

                                                                       
Query: 361 atctctttggttaataagattcaaaaggtttatcgatcccaaggagtgcagatacataat 420
           |||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct: 361 atctctttggttaataagatccaaagggtttatcgatcccaaggggtgcagatccataat 420

                                                                       
Query: 421 aggcatatagaaattattgtacgtcaaataacatccaaagttttggtttcagaagacgga 480
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 421 aggcatatagaaattattgtacgtcaaataacatcaaaagtattggtttcagaagacgga 480

                                                                       
Query: 481 atgtcaaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 540
           ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 481 atgtctaatgttttttcacccggagaactaattagattgttgcaagcggaacgaacggga 540

                                                                       
Query: 541 cgcgctttagaagaagccatctgttatcgagccatattattaggaataacgagagcatct 600
           || ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| 
Sbjct: 541 cgtgctttggaagaagccatctgttaccgagccatattattgggaataacgagagcatcc 600

                                                                       
Query: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgcgttttagca 660
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgtgttttagca 660

                                                                       
Query: 661 aaagccgctctccgcggtcgtatcgattggttgaaaggcctgaaagaaaacgttgttcta 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaagccgctctccgcggtcgtatcgattggttgaaaggcctgaaagaaaacgttgttcta 720

                                                         
Query: 721 ggtggtatgatacccggtggtaccggattcaaaggattagtgcaag 766
           || ||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 721 ggcggtatgatacccgttggtaccggattcaaaggattagtacaag 766


>29852.m001988 30S ribosomal protein S2, putative
          Length = 954

 Score =  416 bits (210), Expect = e-116
 Identities = 267/286 (93%)
 Strand = Plus / Plus

                                                                       
Query: 481 atgtcaaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 540
           ||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||||||
Sbjct: 1   atgtctaatgttttttcacccggagaactaattggattgttacgagcaaaacgaacggga 60

                                                                       
Query: 541 cgcgctttagaagaagccatctgttatcgagccatattattaggaataacgagagcatct 600
           || ||||| ||||||||||||| ||| |||||||||||||| ||||||| ||||||||| 
Sbjct: 61  cgtgctttggaagaagccatctattaccgagccatattattgggaataatgagagcatcc 120

                                                                       
Query: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgcgttttagca 660
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 121 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactactcgtgttttagca 180

                                                                       
Query: 661 aaagccgctctccgcggtcgtatcgattggttgaaaggcctgaaagaaaacgttgttcta 720
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagccgctctccgcggtcgtattaattggttgaaaggcctgaaagaaaacgttgttcta 240

                                                         
Query: 721 ggtggtatgatacccggtggtaccggattcaaaggattagtgcaag 766
           |||||||||||||||  |||| ||||||||||||||||||| ||||
Sbjct: 241 ggtggtatgatacccattggttccggattcaaaggattagtacaag 286


>60340.m000003 DNA-directed RNA polymerase beta chain, putative
          Length = 201

 Score =  313 bits (158), Expect = 1e-84
 Identities = 179/186 (96%)
 Strand = Plus / Plus

                                                                       
Query: 481 atgtcaaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgtctaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 60

                                                                       
Query: 541 cgcgctttagaagaagccatctgttatcgagccatattattaggaataacgagagcatct 600
           || ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| 
Sbjct: 61  cgtgctttggaagaagccatctgttaccgagccatattattgggaataacgagagcatcc 120

                                                                       
Query: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgcgttttagca 660
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 121 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgtgttttagca 180

                 
Query: 661 aaagcc 666
           ||||||
Sbjct: 181 aaagcc 186


>30155.m001629 DNA-directed RNA polymerase beta chain, putative
          Length = 207

 Score =  192 bits (97), Expect = 3e-48
 Identities = 130/141 (92%)
 Strand = Plus / Plus

                                                                       
Query: 634 tttcaagaaactgctcgcgttttagcaaaagccgctctccgcggtcgtatcgattggttg 693
           ||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 64  tttcaagaaactgctcatgttttagcaaaagtcgctctccgtggtcgtatcgattggttg 123

                                                                       
Query: 694 aaaggcctgaaagaaaacgttgttctaggtggtatgatacccggtggtaccggattcaaa 753
           |||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 124 aaaggcttgaaagaaaatgttgttctaggcggtatgatacccgttggtaccggattcaaa 183

                                
Query: 754 ggattagtgcaaggctcaagg 774
           ||||||||  |||| ||||||
Sbjct: 184 ggattagtaaaaggttcaagg 204