Jatropha Genome Database
- Jcr4U29398.20
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jcr4U29398.20
(912 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29923.m000786 DNA-directed RNA polymerase beta chain, putative 1193 0.0
29174.m000010 DNA-directed RNA polymerase beta chain, putative 1170 0.0
29852.m001988 30S ribosomal protein S2, putative 416 e-116
60340.m000003 DNA-directed RNA polymerase beta chain, putative 313 1e-84
30155.m001629 DNA-directed RNA polymerase beta chain, putative 192 3e-48
>29923.m000786 DNA-directed RNA polymerase beta chain, putative
Length = 1083
Score = 1193 bits (602), Expect = 0.0
Identities = 725/766 (94%)
Strand = Plus / Plus
Query: 1 atggccaaaaacggaccccatctaaaatcgggtcaagttataattgttcgcatggactcg 60
||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| | |||
Sbjct: 1 atggccaaaaacggaccacatctaaaatcgggtcaagttataattattcacattggctct 60
Query: 61 gtagtaatacgatcagcaaagccctatttggccgctccaggagcaaccgttcatggccat 120
||||||||| |||| || ||||| ||||||||| |||| |||||||||||||||||||||
Sbjct: 61 gtagtaataagatccgctaagccttatttggccactccgggagcaaccgttcatggccat 120
Query: 121 tatggagaaatcttttacgaaggagatacattagttacatttttatatgaaaaatcgaga 180
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 121 tatggagaaatcctttacgaaggagatacattagttacatttatatatgaaaagtcgaga 180
Query: 181 tctggtgatataacgcagggtcttccaaaagtggaacaagtgttagaagtgcgctcaatt 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 181 tctggtgatataacgcagggtcttccaaaagtagaacaagtgttagaagtgcgttcaatt 240
Query: 241 gattcaatatcgataagcctagaaaagagagttgagggttggaacgagtgtataacaaga 300
|||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||
Sbjct: 241 gattcaatatcgataaacctagaaaagagagttgggggttggaacgaatgtataccaaga 300
Query: 301 attcttggaattccttggggattcttgattggtgctgaactaactatagtgcaaagtcgt 360
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 301 attcttggaattccttggggattcttgattggtactgagctaactatagtgcaaagtcgc 360
Query: 361 atctctttggttaataagattcaaaaggtttatcgatcccaaggagtgcagatacataat 420
|||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct: 361 atctctttggttaataagatccaaagggtttatcgatcccaaggggtgcagatccataat 420
Query: 421 aggcatatagaaattattgtacgtcaaataacatccaaagttttggtttcagaagacgga 480
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 421 aggcatatagaaattattgtacgtcaaataacatcaaaagtattggtttcagaagacgga 480
Query: 481 atgtcaaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgtctaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 540
Query: 541 cgcgctttagaagaagccatctgttatcgagccatattattaggaataacgagagcatct 600
|| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 541 cgtgctttggaagaagccatctgttaccgagccatattattgggaataacgagagcatcc 600
Query: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgcgttttagca 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgtgttttagca 660
Query: 661 aaagccgctctccgcggtcgtatcgattggttgaaaggcctgaaagaaaacgttgttcta 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 661 aaagccgctctccgcggtcgtatcgattggttgaaaggcctgaaagaaaaagttgttcta 720
Query: 721 ggtggtatgatacccggtggtaccggattcaaaggattagtgcaag 766
|| ||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 721 ggcggtatgatacccgttggtaccggattcaaaggattagtacaag 766
>29174.m000010 DNA-directed RNA polymerase beta chain, putative
Length = 1155
Score = 1170 bits (590), Expect = 0.0
Identities = 722/766 (94%)
Strand = Plus / Plus
Query: 1 atggccaaaaacggaccccatctaaaatcgggtcaagttataattgttcgcatggactcg 60
||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| | |||
Sbjct: 1 atggccaaaaacggaccacatctaaaatcgggtcaagttataattattcacattggctct 60
Query: 61 gtagtaatacgatcagcaaagccctatttggccgctccaggagcaaccgttcatggccat 120
||||||||| |||| || ||||| ||||||||| |||| |||||||||||||||||||||
Sbjct: 61 gtagtaataagatccgctaagccttatttggccactccgggagcaaccgttcatggccat 120
Query: 121 tatggagaaatcttttacgaaggagatacattagttacatttttatatgaaaaatcgaga 180
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 121 tatggagaaatcctttacgaaggagatacattagttacatttatatatgaaaagtcgaga 180
Query: 181 tctggtgatataacgcagggtcttccaaaagtggaacaagtgttagaagtgcgctcaatt 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 181 tctggtgatataacgcagggtcttccaaaagtagaacaagtgttagaagtgcattcaatt 240
Query: 241 gattcaatatcgataagcctagaaaagagagttgagggttggaacgagtgtataacaaga 300
|||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||
Sbjct: 241 gattcaatatcgataaacctagaaaagagagttgggggttggaacgaatgtataccaaga 300
Query: 301 attcttggaattccttggggattcttgattggtgctgaactaactatagtgcaaagtcgt 360
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 301 attcttggaattccttggggattcttgattggtattgagctaactatagtgcaaagtcgc 360
Query: 361 atctctttggttaataagattcaaaaggtttatcgatcccaaggagtgcagatacataat 420
|||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct: 361 atctctttggttaataagatccaaagggtttatcgatcccaaggggtgcagatccataat 420
Query: 421 aggcatatagaaattattgtacgtcaaataacatccaaagttttggtttcagaagacgga 480
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 421 aggcatatagaaattattgtacgtcaaataacatcaaaagtattggtttcagaagacgga 480
Query: 481 atgtcaaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 540
||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 481 atgtctaatgttttttcacccggagaactaattagattgttgcaagcggaacgaacggga 540
Query: 541 cgcgctttagaagaagccatctgttatcgagccatattattaggaataacgagagcatct 600
|| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 541 cgtgctttggaagaagccatctgttaccgagccatattattgggaataacgagagcatcc 600
Query: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgcgttttagca 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgtgttttagca 660
Query: 661 aaagccgctctccgcggtcgtatcgattggttgaaaggcctgaaagaaaacgttgttcta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaagccgctctccgcggtcgtatcgattggttgaaaggcctgaaagaaaacgttgttcta 720
Query: 721 ggtggtatgatacccggtggtaccggattcaaaggattagtgcaag 766
|| ||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 721 ggcggtatgatacccgttggtaccggattcaaaggattagtacaag 766
>29852.m001988 30S ribosomal protein S2, putative
Length = 954
Score = 416 bits (210), Expect = e-116
Identities = 267/286 (93%)
Strand = Plus / Plus
Query: 481 atgtcaaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 540
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 1 atgtctaatgttttttcacccggagaactaattggattgttacgagcaaaacgaacggga 60
Query: 541 cgcgctttagaagaagccatctgttatcgagccatattattaggaataacgagagcatct 600
|| ||||| ||||||||||||| ||| |||||||||||||| ||||||| |||||||||
Sbjct: 61 cgtgctttggaagaagccatctattaccgagccatattattgggaataatgagagcatcc 120
Query: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgcgttttagca 660
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 121 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactactcgtgttttagca 180
Query: 661 aaagccgctctccgcggtcgtatcgattggttgaaaggcctgaaagaaaacgttgttcta 720
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagccgctctccgcggtcgtattaattggttgaaaggcctgaaagaaaacgttgttcta 240
Query: 721 ggtggtatgatacccggtggtaccggattcaaaggattagtgcaag 766
||||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct: 241 ggtggtatgatacccattggttccggattcaaaggattagtacaag 286
>60340.m000003 DNA-directed RNA polymerase beta chain, putative
Length = 201
Score = 313 bits (158), Expect = 1e-84
Identities = 179/186 (96%)
Strand = Plus / Plus
Query: 481 atgtcaaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtctaatgttttttcacccggagaactaattggattgttgcgagcggaacgaacggga 60
Query: 541 cgcgctttagaagaagccatctgttatcgagccatattattaggaataacgagagcatct 600
|| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 61 cgtgctttggaagaagccatctgttaccgagccatattattgggaataacgagagcatcc 120
Query: 601 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgcgttttagca 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 121 ctgaatactcaaagtttcatatccgaggccagttttcaagaaactgctcgtgttttagca 180
Query: 661 aaagcc 666
||||||
Sbjct: 181 aaagcc 186
>30155.m001629 DNA-directed RNA polymerase beta chain, putative
Length = 207
Score = 192 bits (97), Expect = 3e-48
Identities = 130/141 (92%)
Strand = Plus / Plus
Query: 634 tttcaagaaactgctcgcgttttagcaaaagccgctctccgcggtcgtatcgattggttg 693
|||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 64 tttcaagaaactgctcatgttttagcaaaagtcgctctccgtggtcgtatcgattggttg 123
Query: 694 aaaggcctgaaagaaaacgttgttctaggtggtatgatacccggtggtaccggattcaaa 753
|||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 124 aaaggcttgaaagaaaatgttgttctaggcggtatgatacccgttggtaccggattcaaa 183
Query: 754 ggattagtgcaaggctcaagg 774
|||||||| |||| ||||||
Sbjct: 184 ggattagtaaaaggttcaagg 204