Jatropha Genome Database

Jcr4U29398.20
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U29398.20 
         (303 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29923.m000786 DNA-directed RNA polymerase beta chain, putative        493   e-140
29174.m000010 DNA-directed RNA polymerase beta chain, putative        480   e-136
29852.m001988 30S ribosomal protein S2, putative                      175   3e-44
60340.m000003 DNA-directed RNA polymerase beta chain, putative        124   6e-29
30155.m001629 DNA-directed RNA polymerase beta chain, putative         91   7e-19
29784.m000366 DNA-directed RNA polymerase II largest subunit, pu...    52   4e-07

>29923.m000786 DNA-directed RNA polymerase beta chain, putative
          Length = 360

 Score =  493 bits (1270), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/270 (91%), Positives = 254/270 (94%)

Query: 1   MAKNGPHLKSGQVIIVRMDSVVIRSAKPYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSR 60
           MAKNGPHLKSGQVII+ + SVVIRSAKPYLA PGATVHGHYGEI YEGDTLVTF+YEKSR
Sbjct: 1   MAKNGPHLKSGQVIIIHIGSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSR 60

Query: 61  SGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNECITRILGIPWGFLIGAELTIVQSR 120
           SGDITQGLPKVEQVLEVRSIDSISI+LEKRV GWNECI RILGIPWGFLIG ELTIVQSR
Sbjct: 61  SGDITQGLPKVEQVLEVRSIDSISINLEKRVGGWNECIPRILGIPWGFLIGTELTIVQSR 120

Query: 121 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 180
           ISLVNKIQ+VYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 121 ISLVNKIQRVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 180

Query: 181 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
           RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE VVL
Sbjct: 181 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEKVVL 240

Query: 241 GGMIPGGTGFKGLVQGSRQHNNIPLKTKKK 270
           GGMIP GTGFKGLVQ SR+   + + TK K
Sbjct: 241 GGMIPVGTGFKGLVQASRRKQFLIVGTKNK 270


>29174.m000010 DNA-directed RNA polymerase beta chain, putative
          Length = 384

 Score =  480 bits (1236), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/255 (93%), Positives = 245/255 (96%)

Query: 1   MAKNGPHLKSGQVIIVRMDSVVIRSAKPYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSR 60
           MAKNGPHLKSGQVII+ + SVVIRSAKPYLA PGATVHGHYGEI YEGDTLVTF+YEKSR
Sbjct: 1   MAKNGPHLKSGQVIIIHIGSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSR 60

Query: 61  SGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNECITRILGIPWGFLIGAELTIVQSR 120
           SGDITQGLPKVEQVLEV SIDSISI+LEKRV GWNECI RILGIPWGFLIG ELTIVQSR
Sbjct: 61  SGDITQGLPKVEQVLEVHSIDSISINLEKRVGGWNECIPRILGIPWGFLIGIELTIVQSR 120

Query: 121 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 180
           ISLVNKIQ+VYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI LL+AERTG
Sbjct: 121 ISLVNKIQRVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIRLLQAERTG 180

Query: 181 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
           RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL
Sbjct: 181 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240

Query: 241 GGMIPGGTGFKGLVQ 255
           GGMIP GTGFKGLVQ
Sbjct: 241 GGMIPVGTGFKGLVQ 255


>29852.m001988 30S ribosomal protein S2, putative
          Length = 317

 Score =  175 bits (443), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/95 (92%), Positives = 91/95 (95%)

Query: 161 MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLA 220
           MSNVFSPGELIGLLRA+RTGRALEEAI YRAILLGI RASLNTQSFISEASFQET RVLA
Sbjct: 1   MSNVFSPGELIGLLRAKRTGRALEEAIYYRAILLGIMRASLNTQSFISEASFQETTRVLA 60

Query: 221 KAALRGRIDWLKGLKENVVLGGMIPGGTGFKGLVQ 255
           KAALRGRI+WLKGLKENVVLGGMIP G+GFKGLVQ
Sbjct: 61  KAALRGRINWLKGLKENVVLGGMIPIGSGFKGLVQ 95


>60340.m000003 DNA-directed RNA polymerase beta chain, putative
          Length = 67

 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 161 MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLA 220
           MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLA
Sbjct: 1   MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLA 60

Query: 221 KA 222
           KA
Sbjct: 61  KA 62


>30155.m001629 DNA-directed RNA polymerase beta chain, putative
          Length = 68

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/47 (91%), Positives = 44/47 (93%)

Query: 212 FQETARVLAKAALRGRIDWLKGLKENVVLGGMIPGGTGFKGLVQGSR 258
           FQETA VLAK ALRGRIDWLKGLKENVVLGGMIP GTGFKGLV+GSR
Sbjct: 22  FQETAHVLAKVALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVKGSR 68


>29784.m000366 DNA-directed RNA polymerase II largest subunit,
            putative
          Length = 1855

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 183  LEEAICYRAILLGITRASLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
            L + + YR  L+ ITR  +N      +   SF+ET  +L  AA+    D+L+G+ EN++L
Sbjct: 1391 LCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADYLRGVTENIML 1450

Query: 241  GGMIPGGTG 249
            G + P GTG
Sbjct: 1451 GQLAPIGTG 1459