Jatropha Genome Database
- Jcr4U29398.20
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4U29398.20
(303 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29923.m000786 DNA-directed RNA polymerase beta chain, putative 493 e-140
29174.m000010 DNA-directed RNA polymerase beta chain, putative 480 e-136
29852.m001988 30S ribosomal protein S2, putative 175 3e-44
60340.m000003 DNA-directed RNA polymerase beta chain, putative 124 6e-29
30155.m001629 DNA-directed RNA polymerase beta chain, putative 91 7e-19
29784.m000366 DNA-directed RNA polymerase II largest subunit, pu... 52 4e-07
>29923.m000786 DNA-directed RNA polymerase beta chain, putative
Length = 360
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/270 (91%), Positives = 254/270 (94%)
Query: 1 MAKNGPHLKSGQVIIVRMDSVVIRSAKPYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSR 60
MAKNGPHLKSGQVII+ + SVVIRSAKPYLA PGATVHGHYGEI YEGDTLVTF+YEKSR
Sbjct: 1 MAKNGPHLKSGQVIIIHIGSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSR 60
Query: 61 SGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNECITRILGIPWGFLIGAELTIVQSR 120
SGDITQGLPKVEQVLEVRSIDSISI+LEKRV GWNECI RILGIPWGFLIG ELTIVQSR
Sbjct: 61 SGDITQGLPKVEQVLEVRSIDSISINLEKRVGGWNECIPRILGIPWGFLIGTELTIVQSR 120
Query: 121 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 180
ISLVNKIQ+VYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 121 ISLVNKIQRVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 180
Query: 181 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE VVL
Sbjct: 181 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEKVVL 240
Query: 241 GGMIPGGTGFKGLVQGSRQHNNIPLKTKKK 270
GGMIP GTGFKGLVQ SR+ + + TK K
Sbjct: 241 GGMIPVGTGFKGLVQASRRKQFLIVGTKNK 270
>29174.m000010 DNA-directed RNA polymerase beta chain, putative
Length = 384
Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/255 (93%), Positives = 245/255 (96%)
Query: 1 MAKNGPHLKSGQVIIVRMDSVVIRSAKPYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSR 60
MAKNGPHLKSGQVII+ + SVVIRSAKPYLA PGATVHGHYGEI YEGDTLVTF+YEKSR
Sbjct: 1 MAKNGPHLKSGQVIIIHIGSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSR 60
Query: 61 SGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNECITRILGIPWGFLIGAELTIVQSR 120
SGDITQGLPKVEQVLEV SIDSISI+LEKRV GWNECI RILGIPWGFLIG ELTIVQSR
Sbjct: 61 SGDITQGLPKVEQVLEVHSIDSISINLEKRVGGWNECIPRILGIPWGFLIGIELTIVQSR 120
Query: 121 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 180
ISLVNKIQ+VYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI LL+AERTG
Sbjct: 121 ISLVNKIQRVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIRLLQAERTG 180
Query: 181 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL
Sbjct: 181 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
Query: 241 GGMIPGGTGFKGLVQ 255
GGMIP GTGFKGLVQ
Sbjct: 241 GGMIPVGTGFKGLVQ 255
>29852.m001988 30S ribosomal protein S2, putative
Length = 317
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/95 (92%), Positives = 91/95 (95%)
Query: 161 MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLA 220
MSNVFSPGELIGLLRA+RTGRALEEAI YRAILLGI RASLNTQSFISEASFQET RVLA
Sbjct: 1 MSNVFSPGELIGLLRAKRTGRALEEAIYYRAILLGIMRASLNTQSFISEASFQETTRVLA 60
Query: 221 KAALRGRIDWLKGLKENVVLGGMIPGGTGFKGLVQ 255
KAALRGRI+WLKGLKENVVLGGMIP G+GFKGLVQ
Sbjct: 61 KAALRGRINWLKGLKENVVLGGMIPIGSGFKGLVQ 95
>60340.m000003 DNA-directed RNA polymerase beta chain, putative
Length = 67
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 161 MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLA 220
MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLA
Sbjct: 1 MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLA 60
Query: 221 KA 222
KA
Sbjct: 61 KA 62
>30155.m001629 DNA-directed RNA polymerase beta chain, putative
Length = 68
Score = 90.9 bits (224), Expect = 7e-19, Method: Composition-based stats.
Identities = 43/47 (91%), Positives = 44/47 (93%)
Query: 212 FQETARVLAKAALRGRIDWLKGLKENVVLGGMIPGGTGFKGLVQGSR 258
FQETA VLAK ALRGRIDWLKGLKENVVLGGMIP GTGFKGLV+GSR
Sbjct: 22 FQETAHVLAKVALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVKGSR 68
>29784.m000366 DNA-directed RNA polymerase II largest subunit,
putative
Length = 1855
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 183 LEEAICYRAILLGITRASLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
L + + YR L+ ITR +N + SF+ET +L AA+ D+L+G+ EN++L
Sbjct: 1391 LCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADYLRGVTENIML 1450
Query: 241 GGMIPGGTG 249
G + P GTG
Sbjct: 1451 GQLAPIGTG 1459