Jatropha Genome Database
- Jcr4U29398.20
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4U29398.20
(303 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATCG00170.1 | Symbols: RPOC2 | DNA-directed RNA polymerase famil... 513 e-146
>ATCG00170.1 | Symbols: RPOC2 | DNA-directed RNA polymerase family
protein | chrC:15938-20068 REVERSE LENGTH=1376
Length = 1376
Score = 513 bits (1321), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/300 (86%), Positives = 275/300 (91%), Gaps = 5/300 (1%)
Query: 1 MAKNGPHLKSGQVIIVRMDSVVIRSAKPYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSR 60
+AK PHLKSGQV+IV+ DS VIRSAKPYLA PGA VHGHY EI YEGDTLVTF+YEKSR
Sbjct: 1074 IAKKEPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSR 1133
Query: 61 SGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNECITRILGIPWGFLIGAELTIVQSR 120
SGDITQGLPKVEQVLEVRSIDSIS++LEKR++GWN+CITRILGIPWGFLIGAELTIVQSR
Sbjct: 1134 SGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSR 1193
Query: 121 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 180
ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAERTG
Sbjct: 1194 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTG 1253
Query: 181 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
RALEEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL
Sbjct: 1254 RALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1313
Query: 241 GGMIPGGTGF-KGLVQGSRQHNNIPLKTKKKN--LFEGEFRDRDILFHHRELFDSCISKN 297
GG+IP GTGF KGLV SRQH NI L+ K KN LFEG+ RDILF+HRE DS ISK+
Sbjct: 1314 GGVIPAGTGFNKGLVHCSRQHTNIILEKKTKNLALFEGDM--RDILFYHREFCDSSISKS 1371