Jatropha Genome Database
- Jcr4U29398.20
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4U29398.20
(303 letters)
Database: Medicago_aa3.5
47,529 sequences; 14,043,872 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g051120.1 DNA-directed RNA polymerase subunit beta'' ... 460 e-130
IMGA|Medtr7g116700.1 DNA-directed RNA polymerase (Fragment) (AHR... 411 e-115
IMGA|Medtr7g069560.1 DNA-directed RNA polymerase (Fragment) (AHR... 339 1e-93
IMGA|Medtr5g098620.1 DNA-directed RNA polymerase subunit beta'' ... 239 1e-63
IMGA|Medtr3g035000.1 Benzoyl coenzyme A benzyl alcohol benzoyl t... 60 2e-09
IMGA|Medtr4g122090.1 DNA-directed RNA polymerase (AHRD V1 *-*- B... 51 9e-07
IMGA|Medtr5g023020.1 DNA-directed RNA polymerase (Fragment) (AHR... 50 2e-06
>IMGA|Medtr4g051120.1 DNA-directed RNA polymerase subunit beta'' (AHRD
V1 ***- Q8HVY3); contains Interpro domain(s) IPR012756
DNA-directed RNA polymerase, subunit beta''
chr04_pseudomolecule_IMGAG_V3.5 15117779-15113443 E
EGN_Mt100125 20100825
Length = 1368
Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/263 (86%), Positives = 243/263 (92%), Gaps = 4/263 (1%)
Query: 3 KNGPHLK--SGQVIIVRMDSVVIRSAKPYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSR 60
KNGPHLK SGQVI V+MDSV+IRSA PYLA P AT+HGHYGEI Y+GD LVTF+YEKSR
Sbjct: 1081 KNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQGDILVTFIYEKSR 1140
Query: 61 SGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNECITRILGIPWGFLIGAELTIVQSR 120
S DITQGLPKVEQ+LE+RSIDSIS++LEKR++ WNECITRILGIPWGFLIGAELTI QSR
Sbjct: 1141 SSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELTIAQSR 1200
Query: 121 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 180
ISLVNKIQKVYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTG 1260
Query: 181 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
RALEEAICYRA+LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL
Sbjct: 1261 RALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1320
Query: 241 GGMIPGGTGFKGLVQ--GSRQHN 261
GGMIP GTGFK ++ SRQ+N
Sbjct: 1321 GGMIPVGTGFKRIMHRSRSRQYN 1343
>IMGA|Medtr7g116700.1 DNA-directed RNA polymerase (Fragment) (AHRD
V1 ***- A9XWB0_9FABA); contains Interpro domain(s)
IPR007081 RNA polymerase Rpb1, domain 5
chr07_pseudomolecule_IMGAG_V3.5 37953907-37951528 E
EGN_Mt100125 20100825
Length = 528
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/243 (82%), Positives = 218/243 (89%), Gaps = 2/243 (0%)
Query: 28 PYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISL 87
P+L AT+H HYGEI Y+GD LVTF+YEKSRSGDITQGLPKVEQ+LE+RSIDSIS++L
Sbjct: 269 PHLKLKSATIHDHYGEILYQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNL 328
Query: 88 EKRVEGWNECITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIV 147
EK ++ WNECITRILGIPWGFLIGAELTI QSRISLVNKIQKVYRSQGV IHNRHIEIIV
Sbjct: 329 EKGIDAWNECITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIV 388
Query: 148 RQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFI 207
RQ+TSKVLVSEDGM NVF PGELIGLLRAERTGRALEEAICYRA+LLGIT+ SLNTQSFI
Sbjct: 389 RQMTSKVLVSEDGMFNVFLPGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFI 448
Query: 208 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPGGTGFKGLVQ--GSRQHNNIPL 265
SEASFQETARVLAKAALRGRIDWLK LKEN +LGGMIP GTGFK ++ SRQ+N I L
Sbjct: 449 SEASFQETARVLAKAALRGRIDWLKVLKENAILGGMIPVGTGFKRIMHRSRSRQYNKITL 508
Query: 266 KTK 268
K K
Sbjct: 509 KIK 511
>IMGA|Medtr7g069560.1 DNA-directed RNA polymerase (Fragment) (AHRD
V1 ***- A9XWB0_9FABA) chr07_pseudomolecule_IMGAG_V3.5
17866015-17864636 E EGN_Mt100125 20100825
Length = 387
Score = 339 bits (870), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 168/215 (78%), Positives = 180/215 (83%), Gaps = 18/215 (8%)
Query: 28 PYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISL 87
P+L AT+HGHYGEI Y+GD LVTF+YEKSRSGDITQGLPKVEQ+LE+RSIDSIS++L
Sbjct: 156 PHLNLKSATIHGHYGEILYQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNL 215
Query: 88 EKRVEGWNECITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIV 147
EKR++ WNECITRIL IPWGFLIGAELTI GV IHNRHIEIIV
Sbjct: 216 EKRIDVWNECITRILDIPWGFLIGAELTI------------------GVHIHNRHIEIIV 257
Query: 148 RQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFI 207
RQITSKVLVSEDGMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGIT+ SLNTQSFI
Sbjct: 258 RQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFI 317
Query: 208 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 242
SEASFQETARVLAKAALRGRIDWLKGLK G
Sbjct: 318 SEASFQETARVLAKAALRGRIDWLKGLKRECCFRG 352
>IMGA|Medtr5g098620.1 DNA-directed RNA polymerase subunit beta''
(Fragment) (AHRD V1 ***- P12227)
chr05_pseudomolecule_IMGAG_V3.5 42134299-42135363 H
EGN_Mt100125 20100825
Length = 212
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/177 (68%), Positives = 129/177 (72%), Gaps = 28/177 (15%)
Query: 3 KNGPHLK--SGQVIIVRMDSVVIRSAKPYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSR 60
KNGPHLK SGQVI ++MDSV+IRSA PYLA P AT+H HYGEI Y+GD LVTF+YEKSR
Sbjct: 62 KNGPHLKLKSGQVITIQMDSVIIRSANPYLATPEATIHSHYGEILYQGDILVTFIYEKSR 121
Query: 61 SGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNECITRILGIPWGFLIGAELTIVQSR 120
SGDITQ WNECITRILGIPWGFLIG ELTI Q
Sbjct: 122 SGDITQA--------------------------WNECITRILGIPWGFLIGVELTIAQIH 155
Query: 121 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAE 177
I LVNKIQK YRSQGV IHNRH +IIVRQITSKVL EDGMSNVF PGELIGLLR E
Sbjct: 156 ICLVNKIQKAYRSQGVHIHNRHNKIIVRQITSKVLALEDGMSNVFLPGELIGLLRTE 212
>IMGA|Medtr3g035000.1 Benzoyl coenzyme A benzyl alcohol benzoyl
transferase (AHRD V1 **-- Q6E593_PETHY); contains
Interpro domain(s) IPR003480 Transferase
chr03_pseudomolecule_IMGAG_V3.5 11496326-11492235 E
EGN_Mt100125 20100825
Length = 308
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 32/38 (84%), Gaps = 2/38 (5%)
Query: 3 KNGPHLK--SGQVIIVRMDSVVIRSAKPYLAAPGATVH 38
KNGPHLK SGQVI V+MDSV+IRSA PYLA P AT+H
Sbjct: 2 KNGPHLKLKSGQVINVQMDSVIIRSANPYLATPEATIH 39
>IMGA|Medtr4g122090.1 DNA-directed RNA polymerase (AHRD V1 *-*-
B8R492_TRISU) chr04_pseudomolecule_IMGAG_V3.5
42199728-42201562 H EGN_Mt100125 20100825
Length = 202
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 136 VQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 173
+ I NRHI+II+RQITSKV VS++ SNVF G+LIGL
Sbjct: 165 LHIRNRHIKIIMRQITSKVFVSKNETSNVFLLGQLIGL 202
>IMGA|Medtr5g023020.1 DNA-directed RNA polymerase (Fragment) (AHRD V1
*-*- B7SNX4_PEA); contains Interpro domain(s) IPR006592
RNA polymerase, N-terminal
chr05_pseudomolecule_IMGAG_V3.5 8873135-8882250 E
EGN_Mt100125 20100825
Length = 1864
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 183 LEEAICYRAILLGITRASLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
L + + YR L+ ITR +N + SF+ET +L AA+ D L+G+ EN++L
Sbjct: 1409 LCDTMTYRGHLMAITRHGINRNETGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIML 1468
Query: 241 GGMIPGGTGFKGLV 254
G + P GTG L+
Sbjct: 1469 GQLAPIGTGECALL 1482