Jatropha Genome Database

Jcr4U28949.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U28949.10 
         (101 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG01070.1 | Symbols: NDHE | NADH-ubiquinone/plastoquinone oxid...   131   8e-32

>ATCG01070.1 | Symbols: NDHE | NADH-ubiquinone/plastoquinone
           oxidoreductase chain 4L | chrC:117804-118109 REVERSE
           LENGTH=101
          Length = 101

 Score =  131 bits (330), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 74/101 (73%)

Query: 1   MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGN 60
           M+LEHVLVLSAYLF IG+YGLITSRNMVRALMCLELILNAVN+NFVTFSDFFD+ QLKG 
Sbjct: 1   MILEHVLVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNSQLKGE 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXSIYRNRKSTRINQSNLLNK 101
                                 SIYRNRKS RINQS LLNK
Sbjct: 61  IFCIFVIAIAAAEAAIGLAIVSSIYRNRKSIRINQSTLLNK 101