Jatropha Genome Database

Jcr4U28949.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4U28949.10 
         (101 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g021710.1 NAD(P)H-quinone oxidoreductase subunit 6 ch...   143   2e-35
IMGA|Medtr4g006110.1 NAD(P)H-quinone oxidoreductase subunit 6 ch...   143   3e-35
IMGA|Medtr5g063410.1 NAD(P)H-quinone oxidoreductase subunit 6 ch...   142   3e-35

>IMGA|Medtr7g021710.1 NAD(P)H-quinone oxidoreductase subunit 6
           chloroplastic (AHRD V1 *-*- B8R4B4_TRISU); contains
           Interpro domain(s)  IPR017863  NADH:ubiquinone
           oxidoreductase, chain 4L, subgroup
           chr07_pseudomolecule_IMGAG_V3.5 5317345-5318556 E
           EGN_Mt100125 20100825
          Length = 280

 Score =  143 bits (360), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 77/101 (76%)

Query: 1   MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGN 60
           MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNIN VTFSDFFD+RQLKGN
Sbjct: 180 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINLVTFSDFFDNRQLKGN 239

Query: 61  XXXXXXXXXXXXXXXXXXXXXXSIYRNRKSTRINQSNLLNK 101
                                 +I RNRKSTRINQSNLLNK
Sbjct: 240 IFSIFVIAIAAAEAAIGLAIVSAIARNRKSTRINQSNLLNK 280


>IMGA|Medtr4g006110.1 NAD(P)H-quinone oxidoreductase subunit 6
           chloroplastic (AHRD V1 *-*- B8R4B4_TRISU); contains
           Interpro domain(s)  IPR017863  NADH:ubiquinone
           oxidoreductase, chain 4L, subgroup
           chr04_pseudomolecule_IMGAG_V3.5 622137-623344 E
           EGN_Mt100125 20100825
          Length = 280

 Score =  143 bits (360), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 77/101 (76%)

Query: 1   MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGN 60
           MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNIN VTFSDFFD+RQLKGN
Sbjct: 180 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINLVTFSDFFDNRQLKGN 239

Query: 61  XXXXXXXXXXXXXXXXXXXXXXSIYRNRKSTRINQSNLLNK 101
                                 +I RNRKSTRINQSNLLNK
Sbjct: 240 IFSIFVIAIAAAEAAIGLAIVSAIARNRKSTRINQSNLLNK 280


>IMGA|Medtr5g063410.1 NAD(P)H-quinone oxidoreductase subunit 6
           chloroplastic (AHRD V1 *-*- B8R4B4_TRISU); contains
           Interpro domain(s)  IPR017863  NADH:ubiquinone
           oxidoreductase, chain 4L, subgroup
           chr05_pseudomolecule_IMGAG_V3.5 25579856-25581317 E
           EGN_Mt100125 20100825
          Length = 280

 Score =  142 bits (359), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 77/101 (76%)

Query: 1   MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGN 60
           MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNIN VTFSDFFD+RQLKGN
Sbjct: 180 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINLVTFSDFFDNRQLKGN 239

Query: 61  XXXXXXXXXXXXXXXXXXXXXXSIYRNRKSTRINQSNLLNK 101
                                 +I RNRKSTRINQSNLLNK
Sbjct: 240 IFSIFVIAIAAAEAAIGLAIVSAIARNRKSTRINQSNLLNK 280