Jatropha Genome Database

Jcr4U28949.10
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jcr4U28949.10 
         (306 letters)

Database: JAT_unigene 
           122,497 sequences; 49,272,789 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig00828  length=6127  numreads=328  gene=isogroup00039  stat...   549   e-156

>contig00828  length=6127  numreads=328  gene=isogroup00039
            status=isotig
          Length = 6127

 Score =  549 bits (277), Expect = e-156
 Identities = 297/306 (97%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgatgctcgaacatgtacttgttttgagtgcctatttattttctatcggtatctatgga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2456 atgatgctcgaacatgtacttgttttgagtgcctatttattttctatcggtatctatgga 2515

                                                                        
Query: 61   ttgatcacgagtcgaaatatggttagagcccttatgtgccttgaacttatactgaatgca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2516 ttgatcacgagtcgaaatatggttagagcccttatgtgccttgaacttatactgaatgca 2575

                                                                        
Query: 121  gttaatataaatttcgtaacattttctgannnnnnngatagtcgccaactaaagggaaat 180
            |||||||||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 2576 gttaatataaatttcgtaacattttctgatttttttgatagtcgccaactaaagggaaat 2635

                                                                        
Query: 181  attttttcaatttttgttatagctatcgcagccgctgaagcagctattggaccagctatt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2636 attttttcaatttttgttatagctatcgcagccgctgaagcagctattggactagctatt 2695

                                                                        
Query: 241  gtttcatcaatttatcgtaacagaaaatcaacccgtatcaatcaatctaatttgttgaat 300
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2696 gtttcatcaatttatcgtaacagaaaatcaacccgtatcaatcaatcgaatttgttgaat 2755

                  
Query: 301  aagtag 306
            ||||||
Sbjct: 2756 aagtag 2761