Jatropha Genome Database

Jcr4S28596.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S28596.10
         (125 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017484001 assembled CDS                                        80   3e-16
GSVIVT01017483001 assembled CDS                                        74   2e-14

>GSVIVT01017484001 assembled CDS
          Length = 49

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 40/43 (93%)

Query: 1  MIIRSPEPEVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTT 43
          MII SPE +VKIL+D DPIKTSFEEWARPGHFSRTIAKGPDTT
Sbjct: 1  MIICSPETKVKILLDLDPIKTSFEEWARPGHFSRTIAKGPDTT 43


>GSVIVT01017483001 assembled CDS
          Length = 345

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query: 29  PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSG 87
           P  + + +A+ P TT  IW   A AHDF+SH    EE + + +F++HFGQL+IIFLW S 
Sbjct: 7   PSIYYQGLAQDP-TTCRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSE 65

Query: 88  MYFHGARFSNYEAWLSDPTHIGPSAQVVW-PIVGQE 122
             FH     N+E+W+ DP H+ P A  +W P  GQ 
Sbjct: 66  NLFHVTWQGNFESWVQDPLHVRPIAHAIWDPHFGQS 101