Jatropha Genome Database

Jcr4S28596.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S28596.10
         (125 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29852.m001990 conserved hypothetical protein                          245   4e-66
30056.m000855 conserved hypothetical protein                          131   7e-32
29852.m001992 conserved hypothetical protein                           78   1e-15

>29852.m001990 conserved hypothetical protein
          Length = 349

 Score =  245 bits (625), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 118/125 (94%), Positives = 120/125 (96%)

Query: 1   MIIRSPEPEVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPE K LVDRDP+KTSFEEWARPGHFSR IAKGPDTTTWIWNLH DAHDFDS+T
Sbjct: 1   MIIRSPEPEEKNLVDRDPVKTSFEEWARPGHFSRIIAKGPDTTTWIWNLHTDAHDFDSYT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 120
           SDLEEISRKVFSAHFGQLSIIFL LSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLSLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 120

Query: 121 QEILN 125
           QEILN
Sbjct: 121 QEILN 125


>30056.m000855 conserved hypothetical protein
          Length = 435

 Score =  131 bits (330), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/116 (60%), Positives = 78/116 (67%), Gaps = 12/116 (10%)

Query: 1   MIIRSPEPEVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MII S EPEVKIL+DRDP+KTSFEEWARPGHFSRTIAKGP TTTWIWNLHA AH+FDSHT
Sbjct: 1   MIIHSLEPEVKILIDRDPVKTSFEEWARPGHFSRTIAKGPYTTTWIWNLHAGAHNFDSHT 60

Query: 61  SDLEEISRKV------------FSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSD 104
           S LEEISRK+            +    G L    L L   +FH  + +   AW  D
Sbjct: 61  SYLEEISRKIWRASRITSELQLYCTAIGALVFAALMLFVGWFHYHKAAPKLAWFQD 116


>29852.m001992 conserved hypothetical protein
          Length = 112

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query: 32  FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYF 90
           FS+ +A+ P TT  IW   A AH F+SH    EE + + +F++HFGQL+IIF+W SG  F
Sbjct: 8   FSQGLAQDP-TTRRIWFGIATAHHFESHDDITEERLYQNIFASHFGQLAIIFMWTSGNLF 66

Query: 91  HGARFSNYEAWLSDPTHIGPSAQVVW-PIVGQ 121
           H A   N+EAW+ DP +I P A  +W P  GQ
Sbjct: 67  HVALQGNFEAWVQDPLNIRPIAHAIWDPHFGQ 98