Jatropha Genome Database

Jcr4S28596.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S28596.10
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00350.1 | Symbols: PSAA | Photosystem I, PsaA/PsaB protein |...   260   1e-70
ATCG00340.1 | Symbols: PSAB | Photosystem I, PsaA/PsaB protein |...    79   6e-16

>ATCG00350.1 | Symbols: PSAA | Photosystem I, PsaA/PsaB protein |
           chrC:39605-41857 REVERSE LENGTH=750
          Length = 750

 Score =  260 bits (665), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/125 (99%), Positives = 125/125 (100%)

Query: 1   MIIRSPEPEVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPIKTSFEEWA+PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG 120

Query: 121 QEILN 125
           QEILN
Sbjct: 121 QEILN 125


>ATCG00340.1 | Symbols: PSAB | Photosystem I, PsaA/PsaB protein |
           chrC:37375-39579 REVERSE LENGTH=734
          Length = 734

 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query: 32  FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYF 90
           FS+ +A+ P TT  IW   A AHDF+SH    EE + + +F++HFGQL+IIFLW SG  F
Sbjct: 8   FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLF 66

Query: 91  HGARFSNYEAWLSDPTHIGPSAQVVW-PIVGQ 121
           H A   N+E W+ DP H+ P A  +W P  GQ
Sbjct: 67  HVAWQGNFETWVQDPLHVRPIAHAIWDPHFGQ 98