Jatropha Genome Database
- Jcr4S28596.10
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4S28596.10
(125 letters)
Database: Medicago_aa3.5
47,529 sequences; 14,043,872 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CU013530_31.1 Photosystem I P700 chlorophyll a apoprotein (... 247 1e-66
IMGA|Medtr3g035600.1 Photosystem I P700 chlorophyll a apoprotein... 247 1e-66
IMGA|Medtr4g051150.1 Photosystem I P700 chlorophyll a apoprotein... 246 2e-66
IMGA|Medtr4g034650.1 Photosystem I P700 chlorophyll a apoprotein... 126 3e-30
IMGA|Medtr5g043610.1 Photosystem I P700 chlorophyll a apoprotein... 104 1e-23
>IMGA|CU013530_31.1 Photosystem I P700 chlorophyll a apoprotein
(AHRD V1 ***- B8R4A2_TRISU); contains Interpro domain(s)
IPR006243 Photosystem I psaA CU013530.14 120495-122751
E EGN_Mt100125 20100825
Length = 600
Score = 247 bits (630), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/133 (90%), Positives = 124/133 (93%), Gaps = 8/133 (6%)
Query: 1 MIIRSPEP--------EVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHAD 52
MIIRSPEP EVKILVDRDPIKTSFE+WA+PGHFSRTIAKGPDTTTWIWNLHAD
Sbjct: 1 MIIRSPEPKVKILVDPEVKILVDRDPIKTSFEQWAKPGHFSRTIAKGPDTTTWIWNLHAD 60
Query: 53 AHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSA 112
AHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWL+DPTHI PSA
Sbjct: 61 AHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLNDPTHIRPSA 120
Query: 113 QVVWPIVGQEILN 125
QVVWPIVGQEILN
Sbjct: 121 QVVWPIVGQEILN 133
>IMGA|Medtr3g035600.1 Photosystem I P700 chlorophyll a apoprotein
(AHRD V1 *-*- B8R4A1_TRISU)
chr03_pseudomolecule_IMGAG_V3.5 11729252-11734232 E
EGN_Mt100125 20100825
Length = 1487
Score = 247 bits (630), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/133 (90%), Positives = 124/133 (93%), Gaps = 8/133 (6%)
Query: 1 MIIRSPEP--------EVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHAD 52
MIIRSPEP EVKILVDRDPIKTSFE+WA+PGHFSRTIAKGPDTTTWIWNLHAD
Sbjct: 1 MIIRSPEPKVKILVDPEVKILVDRDPIKTSFEQWAKPGHFSRTIAKGPDTTTWIWNLHAD 60
Query: 53 AHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSA 112
AHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWL+DPTHI PSA
Sbjct: 61 AHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLNDPTHIRPSA 120
Query: 113 QVVWPIVGQEILN 125
QVVWPIVGQEILN
Sbjct: 121 QVVWPIVGQEILN 133
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 32 FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYF 90
FS+ +A+ P TT IW A AHDF+SH EE + + +F++HFGQL+IIFLW SG F
Sbjct: 761 FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLF 819
Query: 91 HGARFSNYEAWLSDPTHIGPSAQVVW-PIVGQ 121
H A N+EAW+ DP H+ P A +W P GQ
Sbjct: 820 HVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQ 851
>IMGA|Medtr4g051150.1 Photosystem I P700 chlorophyll a apoprotein
(AHRD V1 *-*- B8R4A1_TRISU)
chr04_pseudomolecule_IMGAG_V3.5 15127873-15132983 E
EGN_Mt100125 20100825
Length = 1460
Score = 246 bits (629), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/133 (90%), Positives = 124/133 (93%), Gaps = 8/133 (6%)
Query: 1 MIIRSPEP--------EVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHAD 52
MIIRSPEP EVKILVDRDPIKTSFE+WA+PGHFSRTIAKGPDTTTWIWNLHAD
Sbjct: 1 MIIRSPEPKVKILVDPEVKILVDRDPIKTSFEQWAKPGHFSRTIAKGPDTTTWIWNLHAD 60
Query: 53 AHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSA 112
AHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWL+DPTHI PSA
Sbjct: 61 AHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLNDPTHIRPSA 120
Query: 113 QVVWPIVGQEILN 125
QVVWPIVGQEILN
Sbjct: 121 QVVWPIVGQEILN 133
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 32 FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYF 90
FS+ +A+ P TT IW A AHDF+SH EE + + +F++HFGQL+IIFLW SG F
Sbjct: 734 FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLF 792
Query: 91 HGARFSNYEAWLSDPTHIGPSAQVVW-PIVGQ 121
H A N+EAW+ DP H+ P A +W P GQ
Sbjct: 793 HVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQ 824
>IMGA|Medtr4g034650.1 Photosystem I P700 chlorophyll a apoprotein
(AHRD V1 ***- B8R4A2_TRISU); contains Interpro domain(s)
IPR006243 Photosystem I psaA
chr04_pseudomolecule_IMGAG_V3.5 10844035-10841088 E
EGN_Mt100125 20100825
Length = 756
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/62 (96%), Positives = 61/62 (98%)
Query: 64 EEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEI 123
EEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWL+DPTHI PSAQVVWPIVGQEI
Sbjct: 87 EEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLNDPTHIRPSAQVVWPIVGQEI 146
Query: 124 LN 125
LN
Sbjct: 147 LN 148
>IMGA|Medtr5g043610.1 Photosystem I P700 chlorophyll a apoprotein
(AHRD V1 ***- B8R4A2_TRISU); contains Interpro domain(s)
IPR001280 Photosystem I psaA and psaB
chr05_pseudomolecule_IMGAG_V3.5 18749458-18749204 H
EGN_Mt100125 20100825
Length = 84
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 54/60 (90%)
Query: 66 ISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILN 125
++ KVFSAH GQLSIIFLWLSG+YF+GA FSNYEAWL+DPTHI S Q+VWPIVGQEILN
Sbjct: 13 LNSKVFSAHLGQLSIIFLWLSGIYFYGACFSNYEAWLNDPTHIQLSVQMVWPIVGQEILN 72