Jatropha Genome Database

Jcr4S28292.30
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S28292.30 /short
         (81 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021581001 assembled CDS                                        72   6e-14

>GSVIVT01021581001 assembled CDS
          Length = 62

 Score = 71.6 bits (174), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 37/41 (90%)

Query: 41 RQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
          RQPE EGKIRGTLLLSLAFM+ALTIYGLVV+L LLF N FV
Sbjct: 22 RQPEVEGKIRGTLLLSLAFMKALTIYGLVVSLTLLFVNLFV 62