Jatropha Genome Database

Jcr4S28292.30
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S28292.30 /short
         (81 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00140.1 | Symbols: ATPH | ATP synthase subunit C family prot...   115   7e-27

>ATCG00140.1 | Symbols: ATPH | ATP synthase subunit C family
          protein | chrC:13262-13507 REVERSE LENGTH=81
          Length = 81

 Score =  115 bits (287), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 65/81 (80%)

Query: 1  MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 81
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81