Jatropha Genome Database
- Jcr4S28292.30
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4S28292.30 /short
(81 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATCG00140.1 | Symbols: ATPH | ATP synthase subunit C family prot... 115 7e-27
>ATCG00140.1 | Symbols: ATPH | ATP synthase subunit C family
protein | chrC:13262-13507 REVERSE LENGTH=81
Length = 81
Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/81 (79%), Positives = 65/81 (80%)
Query: 1 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFM 60
MNPL+SAASVIAAGLAVGLASI IARQPEAEGKIRGTLLLSLAFM
Sbjct: 1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
Query: 61 EALTIYGLVVALALLFANPFV 81
EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81