Jatropha Genome Database

Jcr4S28292.30
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S28292.30 /short
         (81 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g051110.1 ATP synthase subunit a chloroplastic (AHRD ...   101   1e-22

>IMGA|Medtr4g051110.1 ATP synthase subunit a chloroplastic (AHRD V1
           *-*- B8R490_TRISU); contains Interpro domain(s)
           IPR005706  Ribosomal protein S2, bacterial-type
           chr04_pseudomolecule_IMGAG_V3.5 15113402-15108879 E
           EGN_Mt100125 20100825
          Length = 644

 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 60/77 (77%)

Query: 1   MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFM 60
           M+PLISAASVIAAGLAVGLASI                IARQPEAE KIRGTLLLSLAFM
Sbjct: 473 MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIRGTLLLSLAFM 532

Query: 61  EALTIYGLVVALALLFA 77
           EALTIYGLVVALALLF+
Sbjct: 533 EALTIYGLVVALALLFS 549