Jatropha Genome Database
- Jcr4S28292.30
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4S28292.30 /short
(81 letters)
Database: Medicago_aa3.5
47,529 sequences; 14,043,872 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g051110.1 ATP synthase subunit a chloroplastic (AHRD ... 101 1e-22
>IMGA|Medtr4g051110.1 ATP synthase subunit a chloroplastic (AHRD V1
*-*- B8R490_TRISU); contains Interpro domain(s)
IPR005706 Ribosomal protein S2, bacterial-type
chr04_pseudomolecule_IMGAG_V3.5 15113402-15108879 E
EGN_Mt100125 20100825
Length = 644
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 60/77 (77%)
Query: 1 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFM 60
M+PLISAASVIAAGLAVGLASI IARQPEAE KIRGTLLLSLAFM
Sbjct: 473 MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIRGTLLLSLAFM 532
Query: 61 EALTIYGLVVALALLFA 77
EALTIYGLVVALALLF+
Sbjct: 533 EALTIYGLVVALALLFS 549