Jatropha Genome Database
- Jcr4S28292.30
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jcr4S28292.30 /short
(246 letters)
Database: JAT_unigene
122,497 sequences; 49,272,789 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
contig00003 length=10213 numreads=756 gene=isogroup00001 sta... 488 e-137
EST_GT976404 194 3e-49
tissues_GDVQYP002I0XCM 62 2e-09
>contig00003 length=10213 numreads=756 gene=isogroup00001
status=ig_thresh
Length = 10213
Score = 488 bits (246), Expect = e-137
Identities = 246/246 (100%)
Strand = Plus / Minus
Query: 1 atgaatccattgatttctgccgcttccgttattgctgctgggttggctgttgggcttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 atgaatccattgatttctgccgcttccgttattgctgctgggttggctgttgggcttgct 1025
Query: 61 tctattggacctggggttggtcaaggtactgccgcgggccaagctgtagaaggtatcgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tctattggacctggggttggtcaaggtactgccgcgggccaagctgtagaaggtatcgca 965
Query: 121 agacaacccgaggcggagggaaaaatacgaggtactttattgcttagtctggcttttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 agacaacccgaggcggagggaaaaatacgaggtactttattgcttagtctggcttttatg 905
Query: 181 gaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatcctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatcctttt 845
Query: 241 gtttaa 246
||||||
Sbjct: 844 gtttaa 839
>EST_GT976404
Length = 390
Score = 194 bits (98), Expect = 3e-49
Identities = 159/176 (90%), Gaps = 5/176 (2%)
Strand = Plus / Plus
Query: 73 ggggttggtcaaggtactgccgcgggccaagctgtagaaggtatcgcaagacaacccgag 132
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 ggggttggtcaaggtactgccgcgggccaagctgtagaaggtatcgcaagacaa-ccgag 59
Query: 133 gcggagggaaaaatacgag--gtactttattgcttagtctggcttttatggaagctttaa 190
||||||| |||||||||| | ||| ||||||||||||||||||| | | |||||
Sbjct: 60 gcggagg--aaaatacgagtcttttttttttgcttagtctggcttttaggaactttttaa 117
Query: 191 caatttatggactggttgtagcattagcacttttatttgcgaatccttttgtttaa 246
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 118 cattttatggactggttgtaccattaccacttttatttgcgaatccttttgtttaa 173
>tissues_GDVQYP002I0XCM
Length = 403
Score = 61.9 bits (31), Expect = 2e-09
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 123 acaacccgaggcggagggaaaaatacgaggtactttattgcttagtc 169
|||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 243 acaacccgaggcggaggg-aaagtacaaggtactttattgcttagtc 288