Jatropha Genome Database

Jcr4S28292.30
Show Alignment: 
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jcr4S28292.30 /short
         (246 letters)

Database: JAT_unigene 
           122,497 sequences; 49,272,789 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig00003  length=10213  numreads=756  gene=isogroup00001  sta...   488   e-137
EST_GT976404                                                          194   3e-49
tissues_GDVQYP002I0XCM                                                 62   2e-09

>contig00003  length=10213  numreads=756  gene=isogroup00001
            status=ig_thresh
          Length = 10213

 Score =  488 bits (246), Expect = e-137
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgaatccattgatttctgccgcttccgttattgctgctgggttggctgttgggcttgct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 atgaatccattgatttctgccgcttccgttattgctgctgggttggctgttgggcttgct 1025

                                                                        
Query: 61   tctattggacctggggttggtcaaggtactgccgcgggccaagctgtagaaggtatcgca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tctattggacctggggttggtcaaggtactgccgcgggccaagctgtagaaggtatcgca 965

                                                                        
Query: 121  agacaacccgaggcggagggaaaaatacgaggtactttattgcttagtctggcttttatg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  agacaacccgaggcggagggaaaaatacgaggtactttattgcttagtctggcttttatg 905

                                                                        
Query: 181  gaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatcctttt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  gaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatcctttt 845

                  
Query: 241  gtttaa 246
            ||||||
Sbjct: 844  gtttaa 839


>EST_GT976404
          Length = 390

 Score =  194 bits (98), Expect = 3e-49
 Identities = 159/176 (90%), Gaps = 5/176 (2%)
 Strand = Plus / Plus

                                                                       
Query: 73  ggggttggtcaaggtactgccgcgggccaagctgtagaaggtatcgcaagacaacccgag 132
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1   ggggttggtcaaggtactgccgcgggccaagctgtagaaggtatcgcaagacaa-ccgag 59

                                                                       
Query: 133 gcggagggaaaaatacgag--gtactttattgcttagtctggcttttatggaagctttaa 190
           |||||||  ||||||||||   |  ||| ||||||||||||||||||| | |   |||||
Sbjct: 60  gcggagg--aaaatacgagtcttttttttttgcttagtctggcttttaggaactttttaa 117

                                                                   
Query: 191 caatttatggactggttgtagcattagcacttttatttgcgaatccttttgtttaa 246
           || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 118 cattttatggactggttgtaccattaccacttttatttgcgaatccttttgtttaa 173


>tissues_GDVQYP002I0XCM
          Length = 403

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 44/47 (93%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                          
Query: 123 acaacccgaggcggagggaaaaatacgaggtactttattgcttagtc 169
           |||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 243 acaacccgaggcggaggg-aaagtacaaggtactttattgcttagtc 288