Jatropha Genome Database

Jcr4S20322.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S20322.10 /pseudo/partial
         (116 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010924001 assembled CDS                                        85   7e-18

>GSVIVT01010924001 assembled CDS
          Length = 120

 Score = 84.7 bits (208), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/42 (92%), Positives = 39/42 (92%)

Query: 4   FETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 45
           FETFYTKNILLNEGI AWMAAQDQ HENLIFPEEVLPRGN L
Sbjct: 79  FETFYTKNILLNEGILAWMAAQDQLHENLIFPEEVLPRGNTL 120