Jatropha Genome Database
- Jcr4S20322.10
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jcr4S20322.10 /pseudo/partial
(350 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29652.m000334 conserved hypothetical protein 357 3e-98
30180.m001045 conserved hypothetical protein 315 1e-85
39576.m000007 Photosystem II D2 protein, putative 270 5e-72
38271.m000007 Photosystem II D2 protein, putative 270 5e-72
30180.m001039 conserved hypothetical protein 178 1e-44
30180.m001043 conserved hypothetical protein 129 1e-29
29842.m003685 conserved hypothetical protein 113 7e-25
>29652.m000334 conserved hypothetical protein
Length = 414
Score = 357 bits (180), Expect = 3e-98
Identities = 210/220 (95%)
Strand = Plus / Plus
Query: 88 atgaaaaccttatattccctgaggaggttctaccacgtggaaacgctctttaatggaact 147
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaaaaccttatattccccgaggaggttctaccacgtggaaacgctctttaatggaact 60
Query: 148 ttatctttagccggtcgtgaccaagaaactaccggtttcgcttggtgggccgggaatgcc 207
||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct: 61 ttatctttagctggtcgtgaccaagaaaccaccggtttcacttggtgggctaggaatgcc 120
Query: 208 cgacttatcaatttatccggtaaactactgggagctcatgtagctcatgctggattaatc 267
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 121 cgacttattaatttatccggtaaactactgggagcccatgtagcccatgctggattaatc 180
Query: 268 gtattctgggccggagcaatgaacctatttgaagtggctc 307
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 gtattctgggccggagcaatgaacctattcgaagtggctc 220
>30180.m001045 conserved hypothetical protein
Length = 738
Score = 315 bits (159), Expect = 1e-85
Identities = 208/223 (93%), Gaps = 1/223 (0%)
Strand = Plus / Plus
Query: 1 aagatcctgaatttgagactttctacactaaaaatattctcttaaacgaaggtattcgtg 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 326 aagatcttgaatttgagactttctacactaaaaatattctcttaaacgaaggtattcggg 385
Query: 61 cttggatggcggctcaagatcagcctcatgaaaaccttatattccctgaggaggttctac 120
||||||||| | |||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct: 386 cttggatggggactcaagatcagcctcatgaaaaccttgtatt-cctgagaaggttctac 444
Query: 121 cacgtggaaacgctctttaatggaactttatctttagccggtcgtgaccaagaaactacc 180
|||||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 445 cacgtggaaatgctctttaatggaactttatctttagccgatcatgaccaagaaaccact 504
Query: 181 ggtttcgcttggtgggccgggaatgcccgacttatcaatttat 223
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 agtttcgcttggtgggctaggaatgcccgacttatcaatttat 547
>39576.m000007 Photosystem II D2 protein, putative
Length = 468
Score = 270 bits (136), Expect = 5e-72
Identities = 139/140 (99%)
Strand = Plus / Plus
Query: 1 aagatcctgaatttgagactttctacactaaaaatattctcttaaacgaaggtattcgtg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 329 aagatcctgaatttgagactttctacactaaaaatattctcttaaacgaaggtattcggg 388
Query: 61 cttggatggcggctcaagatcagcctcatgaaaaccttatattccctgaggaggttctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cttggatggcggctcaagatcagcctcatgaaaaccttatattccctgaggaggttctac 448
Query: 121 cacgtggaaacgctctttaa 140
||||||||||||||||||||
Sbjct: 449 cacgtggaaacgctctttaa 468
>38271.m000007 Photosystem II D2 protein, putative
Length = 468
Score = 270 bits (136), Expect = 5e-72
Identities = 139/140 (99%)
Strand = Plus / Plus
Query: 1 aagatcctgaatttgagactttctacactaaaaatattctcttaaacgaaggtattcgtg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 329 aagatcctgaatttgagactttctacactaaaaatattctcttaaacgaaggtattcggg 388
Query: 61 cttggatggcggctcaagatcagcctcatgaaaaccttatattccctgaggaggttctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cttggatggcggctcaagatcagcctcatgaaaaccttatattccctgaggaggttctac 448
Query: 121 cacgtggaaacgctctttaa 140
||||||||||||||||||||
Sbjct: 449 cacgtggaaacgctctttaa 468
>30180.m001039 conserved hypothetical protein
Length = 393
Score = 178 bits (90), Expect = 1e-44
Identities = 123/134 (91%)
Strand = Plus / Plus
Query: 1 aagatcctgaatttgagactttctacactaaaaatattctcttaaacgaaggtattcgtg 60
||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct: 254 aagatcctggaattgagaatttctacactaaaaatattctcttaaaagaaggtattcaag 313
Query: 61 cttggatggcggctcaagatcagcctcatgaaaaccttatattccctgaggaggttctac 120
|||||||||||||||||||||| |||||||| | ||||||||||| | ||||||||||||
Sbjct: 314 cttggatggcggctcaagatcaacctcatgagatccttatattccgtaaggaggttctac 373
Query: 121 cacgtggaaacgct 134
||||||||||||||
Sbjct: 374 cacgtggaaacgct 387
>30180.m001043 conserved hypothetical protein
Length = 309
Score = 129 bits (65), Expect = 1e-29
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 1 aagatcctgaatttgagactttctacactaaaaatattctcttaaacgaaggtattcgtg 60
||||||||| | |||||| ||||||||||||||||||||||||||| |||| ||||| |
Sbjct: 200 aagatcctggaattgagaatttctacactaaaaatattctcttaaaagaagatattcaag 259
Query: 61 cttggatggcggctcaagatcagcctcatgaaaaccttatattcc 105
|||||||||||||||||||||| |||||||| | |||||||||||
Sbjct: 260 cttggatggcggctcaagatcaacctcatgagatccttatattcc 304
>29842.m003685 conserved hypothetical protein
Length = 582
Score = 113 bits (57), Expect = 7e-25
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 125 tggaaacgctctttaatggaactttatctttagccggtcgtgaccaagaaactaccggtt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2 tggaaacgctctttaatggaactttatctttagccggtcgtgaccaagaaaccaccggtt 61
Query: 185 t 185
|
Sbjct: 62 t 62