Jatropha Genome Database

Jcr4S20322.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S20322.10 /pseudo/partial
         (116 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

39576.m000007 Photosystem II D2 protein, putative                      99   4e-22
38271.m000007 Photosystem II D2 protein, putative                      99   4e-22
30180.m001039 conserved hypothetical protein                           79   4e-16
30180.m001045 conserved hypothetical protein                           69   3e-13
30180.m001043 conserved hypothetical protein                           60   2e-10

>39576.m000007 Photosystem II D2 protein, putative
          Length = 155

 Score = 99.0 bits (245), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1   DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 45
           DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 111 DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 155


>38271.m000007 Photosystem II D2 protein, putative
          Length = 155

 Score = 99.0 bits (245), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1   DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 45
           DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 111 DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 155


>30180.m001039 conserved hypothetical protein
          Length = 130

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 38/45 (84%)

Query: 1   DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 45
           DP  E FYTKNILL EGI+AWMAAQDQPHE LIF +EVLPRGNA 
Sbjct: 86  DPGIENFYTKNILLKEGIQAWMAAQDQPHEILIFRKEVLPRGNAF 130


>30180.m001045 conserved hypothetical protein
          Length = 245

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 31/34 (91%)

Query: 1   DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIF 34
           D EFETFYTKNILLNEGIRAWM  QDQPHENL+F
Sbjct: 110 DLEFETFYTKNILLNEGIRAWMGTQDQPHENLVF 143


>30180.m001043 conserved hypothetical protein
          Length = 102

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 28/34 (82%)

Query: 1   DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIF 34
           DP  E FYTKNILL E I+AWMAAQDQPHE LIF
Sbjct: 68  DPGIENFYTKNILLKEDIQAWMAAQDQPHEILIF 101