Jatropha Genome Database

Jcr4S20322.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S20322.10 /pseudo/partial
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00270.1 | Symbols: PSBD | photosystem II reaction center pro...   100   1e-22

>ATCG00270.1 | Symbols: PSBD | photosystem II reaction center
           protein D | chrC:32711-33772 FORWARD LENGTH=353
          Length = 353

 Score =  100 bits (250), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1   DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 45
           DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 309 DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353