Jatropha Genome Database

Jcr4S20322.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S20322.10 /pseudo/partial
         (116 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g014470.1 Photosystem II CP43 chlorophyll apoprotein ...    95   9e-21
IMGA|Medtr4g051180.1 Photosystem II CP43 chlorophyll apoprotein ...    94   2e-20
IMGA|Medtr4g053870.1 Photosystem II protein D2 (AHRD V1 ***- D3J...    89   5e-19
IMGA|Medtr7g026870.1 Photosystem II D2 protein (AHRD V1 *-*- C5H...    75   8e-15
IMGA|Medtr4g034980.1 Photosystem II CP43 chlorophyll apoprotein ...    47   3e-06

>IMGA|Medtr8g014470.1 Photosystem II CP43 chlorophyll apoprotein
           (AHRD V1 *-*- B8R498_TRISU); contains Interpro domain(s)
            IPR000932  Photosystem antenna protein-like
           chr08_pseudomolecule_IMGAG_V3.5 3112960-3111384 H
           EGN_Mt100125 20100825
          Length = 480

 Score = 94.7 bits (234), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 42/47 (89%)

Query: 1   DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL*W 47
           DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLP+     W
Sbjct: 169 DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPQTTGFAW 215


>IMGA|Medtr4g051180.1 Photosystem II CP43 chlorophyll apoprotein
           (AHRD V1 *-*- B7ZIE2_EPHEU); contains Interpro domain(s)
            IPR005869  Photosystem II protein PsbC
           chr04_pseudomolecule_IMGAG_V3.5 15137626-15135118 E
           EGN_Mt100125 20100825
          Length = 793

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 42/47 (89%)

Query: 1   DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL*W 47
           DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLP+     W
Sbjct: 309 DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPQTTGFAW 355


>IMGA|Medtr4g053870.1 Photosystem II protein D2 (AHRD V1 ***-
           D3J8G0_9FABA); contains Interpro domain(s)  IPR005868
           Photosystem II reaction centre protein PsbD/D2
           chr04_pseudomolecule_IMGAG_V3.5 16270179-16271258 E
           EGN_Mt100125 20100825
          Length = 359

 Score = 89.0 bits (219), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 40/41 (97%), Positives = 40/41 (97%)

Query: 1   DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPR 41
           DPEFETFYTKNILLNEGIRAWMAA DQPHENLIFPEEVLPR
Sbjct: 309 DPEFETFYTKNILLNEGIRAWMAASDQPHENLIFPEEVLPR 349


>IMGA|Medtr7g026870.1 Photosystem II D2 protein (AHRD V1 *-*-
          C5HY51_9TRAC) chr07_pseudomolecule_IMGAG_V3.5
          7459192-7459787 E EGN_Mt100125 20100825
          Length = 152

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 36/41 (87%)

Query: 4  FETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNA 44
          FE F TKNILLNE IRAWMAAQDQ H+NL+FPEEVLP GNA
Sbjct: 29 FEIFNTKNILLNECIRAWMAAQDQAHQNLVFPEEVLPSGNA 69


>IMGA|Medtr4g034980.1 Photosystem II CP43 chlorophyll apoprotein
           (AHRD V1 ***- B8R498_TRISU); contains Interpro domain(s)
            IPR005868  Photosystem II reaction centre protein
           PsbD/D2 chr04_pseudomolecule_IMGAG_V3.5
           10928055-10925594 E EGN_Mt100125 20100825
          Length = 734

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/20 (100%), Positives = 20/20 (100%)

Query: 1   DPEFETFYTKNILLNEGIRA 20
           DPEFETFYTKNILLNEGIRA
Sbjct: 309 DPEFETFYTKNILLNEGIRA 328